View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_2 (Length: 452)
Name: NF13827_low_2
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 43184131 - 43184424
Alignment:
| Q |
20 |
ataggtcatccttattataagattctcaaacatgtatccaatatctttccatatgtacatttatctaagaaacaaaagttacatat----------aatt |
109 |
Q |
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| T |
43184131 |
ataggtcatccttattataagattctcaaacatgtatccaatatctttccatatgtacatttatctaagaaacaaaagttacatttcatgtcaagtaatt |
43184230 |
T |
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| Q |
110 |
ctcaatctgcaaaatcttttgacttaatttatatagacaccaggagtcgacttgttatcacctctattcacatctatttctattttctaacaattgtaga |
209 |
Q |
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| T |
43184231 |
ctcaatctgcaaaatcttttgacttaattcatatagacaccaggagtcgacttgttatcacctctattcacatctatttctattttctaacaactgtaga |
43184330 |
T |
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| Q |
210 |
tgatcacactcatcatggtttatgttacgaaatccaaagatgaaaacatacaaagaactgggggacataaaaactgaccattgacactaacatg |
303 |
Q |
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| T |
43184331 |
tgatcacactcatcatggtttatgttacgaaatccaaagatgaaagcatacaaagaactgggggacataaaacctgaccattgacaccaacatg |
43184424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 43184461 - 43184560
Alignment:
| Q |
342 |
ccaacctaaattgcaataattaatagcttaattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
441 |
Q |
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| T |
43184461 |
ccaacctaaattgcaataattaatagcttgattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
43184560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 43063029 - 43062973
Alignment:
| Q |
24 |
gtcatccttattataagattctcaaacatgtatccaatatctttccatatgtacatt |
80 |
Q |
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| T |
43063029 |
gtcatccttattataagattctcaaacatgtatccaatatctttgcatatctacatt |
43062973 |
T |
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