View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_4 (Length: 438)
Name: NF13827_low_4
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 4483389 - 4482970
Alignment:
| Q |
18 |
gaaataaggttactggaaaaacagaatgtttcaggggtgtccactggcctgggaatttagaccgtggtccaaagggcttgaacatgccaccagnnnnnnn |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
4483389 |
gaaataaggttactggaaaaacagaatgtttcaggggtgtccactggcctgggaatttagaccgtggtccaaagggct-gaacatgcctacagaaaaaaa |
4483291 |
T |
|
| Q |
118 |
t--ccattgaaaattgcagtcaaaagtacctatttttccaagtatgtcaaagttgagtatggccagaatggaaagcctgataaatatagtg-attctgca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4483290 |
aaaccattgaaaattgcagtcaaaagtacctatttttccaagtatgtcaaggttgagtatggccagaatggaaagcctgataaatatagtggattctgca |
4483191 |
T |
|
| Q |
215 |
tttatatttttgagcatgtactaaaccatttggggt----tctgcctctgccatataggtattatcccatcaatggaacctataatgacatggttcagct |
310 |
Q |
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| T |
4483190 |
ttgatatttttgagcatgtgctaaaccatttggggtacggtctgcctcggccatataggtattatcccatcaatggaacctataatgatatggttcagct |
4483091 |
T |
|
| Q |
311 |
tgtctataacaaggtatcaaatctatcttttctttgaaatgaaatgttttattttggtttctatttgattatcattatcccccctatcaattgaagactc |
410 |
Q |
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| T |
4483090 |
tgtctataacaaggtatcaaatctatcttttctttgaaatgaaatgttttattttggtttctattttattatcattatcccccctatcaattgaagactc |
4482991 |
T |
|
| Q |
411 |
ggccctttctgtgatgatgtc |
431 |
Q |
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| T |
4482990 |
atccctttctgtgatgatgtc |
4482970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 4488357 - 4487939
Alignment:
| Q |
18 |
gaaataaggttactggaaaaacagaatgtttcaggggtgtccactggcctgggaatttagaccgtggtccaaagggcttgaacatgccaccagnnnnnnn |
117 |
Q |
| |
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||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||||| | |||| ||||||||||| ||||||||| ||| |
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| T |
4488357 |
gaaataaggttgctggaaatacaaaatgtttcaggggtgtacggtggcctgggaattgggcccgtattccaaagggctggaacatgcccacagaaaaaaa |
4488258 |
T |
|
| Q |
118 |
tccattgaaaattgcagtcaaaagta---cctatttttccaagtatgtcaaagttgagtatggccagaatggaaagcctgataaatatagtg-attctgc |
213 |
Q |
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|||||||| ||||||||||| ||| | ||| ||||||| || |||||| |||| |||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
4488257 |
tccattgagaattgcagtcagaagcagaacctcgttttccaggtttgtcaaggttgtgtatggccagaatggagagcctgataaatatactggattctgc |
4488158 |
T |
|
| Q |
214 |
atttatatttttgagcatgtactaaaccatttggggttctgcctctgccatataggtattatcccatcaatggaacctataatgacatggttcagcttgt |
313 |
Q |
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| T |
4488157 |
attgaaatttttgagcatgtactgaaccatttggggtacga--tctgccatatagttattatcccatcgatggaacctataatgatttggttcagcttgt |
4488060 |
T |
|
| Q |
314 |
ctataacaaggtatcaaatctatcttt-----tctttgaaatgaaatgttttattttggtttctatttgattatcattatcccccctatcaattgaagac |
408 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||| | || || |
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| T |
4488059 |
ctataacaaggtatcaaatctatcttttcttctctttgaaatgaaatgcttaattttggtttctatttgattatcatcctcctccctatcaactcaatac |
4487960 |
T |
|
| Q |
409 |
tcggccctttctgtgatgatgt |
430 |
Q |
| |
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| | ||||||||||||||||| |
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| T |
4487959 |
t-agtcctttctgtgatgatgt |
4487939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 34606015 - 34606071
Alignment:
| Q |
270 |
tattatcccatcaatggaacctataatgacatggttcagcttgtctataacaaggta |
326 |
Q |
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|||||||||||||| | |||||||||||| ||||||| ||||| |||||||||||| |
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| T |
34606015 |
tattatcccatcaacgcaacctataatgatctggttcaacttgtttataacaaggta |
34606071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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