View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_5 (Length: 418)
Name: NF13827_low_5
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 45 - 411
Target Start/End: Complemental strand, 2741690 - 2741324
Alignment:
| Q |
45 |
caatagtttagttatgtattttaattgtgttgaagttttttagtatggcggaatttttgtaaagcatactggtattttataacaaacatcatagttcatt |
144 |
Q |
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| T |
2741690 |
caatactttagttatgtattttaattgtgttgaagttttt-agtacggcgaaatttttgtaaagtatactggtattttataacaaaaatcatagttcatt |
2741592 |
T |
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| Q |
145 |
ggtaaagtttgaaatttttggaccaaatcatctctcacttttatatatcaaaatgatcactattgatcagctatccaaactccattaacccaaatttcac |
244 |
Q |
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| T |
2741591 |
ggtaaagtttgaaattctgttactaaatcgtctctcacttttatataacaaaatgatcactattgatcagctatccaaactccattaacccaaatttcac |
2741492 |
T |
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| Q |
245 |
ccaaacctctggaatgaacatccgacttcagggacagacagactctgtttcagctcatg-tctccgttatttttcaaatgcttattttcttcaatggaat |
343 |
Q |
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|||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||| |||||||||| |||||||||| ||| ||| ||| |
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| T |
2741491 |
tcaaacctctggaatgaacatgtaacttcaggtacaaacagactctgtttcagctcatgatctccgctatttttcaactgcttattttattcgatgaaat |
2741392 |
T |
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| Q |
344 |
cttagatatgagattcaaacatttgttttacacgcaagcttaaagaaaatcatatactaattcatctc |
411 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
2741391 |
cttagatatgagattcaaacatttgttttacccacaagcttaaagaaaatcatatactaattcatctc |
2741324 |
T |
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