View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_6 (Length: 414)
Name: NF13827_low_6
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_6 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 92 - 414
Target Start/End: Complemental strand, 1228343 - 1228011
Alignment:
| Q |
92 |
ctcaagttaacaaaatta----ataatgaagataatttttgtattccttggcatactaatattacatgaccagatgccaattacataaatgactttttat |
187 |
Q |
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| T |
1228343 |
ctcaagttaacaatattactccataatgaacataatttttttattccttggcatactaatactacatgaccagatgccaattacataaatgactttttat |
1228244 |
T |
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| Q |
188 |
atgtcatatcatggcatagttcacatattcataataatgcctcggagacaat------gtatgaatctgttttctatagctattgttatttctggaaggt |
281 |
Q |
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| T |
1228243 |
atgtcatatcatggcatagttcatatattcataataatgctttggagacaattttaatgtatgaatctattttctatagttattgttatttctggaaggt |
1228144 |
T |
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| Q |
282 |
ttaacttcaacctcttttaggtaacaatggctccattttccttgctgcatgttcaaaaggcttctcatcttgatacacatgggtttgatataataggata |
381 |
Q |
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| T |
1228143 |
ttaacttcaacccctttttggtaacaatgactccattttccttgctgcatgttcaaaaggcttctcatcttgatgcacatgggtgtgatataatatgata |
1228044 |
T |
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| Q |
382 |
gtagaatttacatcaaagtcggtagtaacagaa |
414 |
Q |
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| T |
1228043 |
ttaggatttacatcaaagtcggtagtaaaagaa |
1228011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 214 - 414
Target Start/End: Complemental strand, 41966850 - 41966650
Alignment:
| Q |
214 |
attcataataatgcctcggagacaatgtatgaatctgttttctatagctattgttatttctggaaggtttaacttcaacctcttttaggtaacaatggct |
313 |
Q |
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| T |
41966850 |
attcataataatgcctcggagacaatgtatgaatctgttttctatagttatcgttatttctggaaggtttaaattcaacctcttttaggtaacaatggct |
41966751 |
T |
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| Q |
314 |
ccattttccttgctgcatgttcaaaaggcttctcatcttgatacacatgggtttgatataataggatagtagaatttacatcaaagtcggtagtaacaga |
413 |
Q |
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| T |
41966750 |
ccattttccttgctgcatgttgaaaaggcttctcatcttgatgcacatgggtgtgatataatatgatattaggatttacatcaaagtcggtagtaaaaga |
41966651 |
T |
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| Q |
414 |
a |
414 |
Q |
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| T |
41966650 |
a |
41966650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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