View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13828_high_5 (Length: 392)
Name: NF13828_high_5
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13828_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 38039298 - 38038933
Alignment:
| Q |
11 |
atatatagttataaaaaagagtggccttaccaatggctacttagaattctggggaacatgtcaatcttctgacctccaagatcaaaagatatgggtttaa |
110 |
Q |
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| T |
38039298 |
atatatagttataaaaaagtgtggccttaccaatggctacttagaattctggggaacatgtcaatcttctgacctccaagatcaaaagcaatgggtttaa |
38039199 |
T |
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| Q |
111 |
aacactcatgcattagagataatgcaacatccatctttgaagtagttgggtccattttatgtaattgacgcaaaaatgtgcaagaaaatccatctccaat |
210 |
Q |
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| T |
38039198 |
aacactcatgcattagagataatgcaacatccatctttgaagtagttgggtccattttatgtaattgacgcaaaaatgtgcaagaaaatccatctccaat |
38039099 |
T |
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| Q |
211 |
gtcatgtctattccatagaagcatttcaaacctctcatatatctggaaacacaatttttaactataatcaaaaagagtttgttcgtgtcattgagaaaaa |
310 |
Q |
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| T |
38039098 |
gtcatgtctattccatagaagcatttcaaacctctcatatatctggaaacacaatttttaactataatcaaaaagagtttgttcgtgtcattgagaaaaa |
38038999 |
T |
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| Q |
311 |
ggagatattgtacatcctctatacacaaacataaggtaattaacatttaaacattctctctaaaag |
376 |
Q |
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| T |
38038998 |
ggagatattgtacatcctctatacacaaacataaggtaattaacatttaaacattttctctaaaag |
38038933 |
T |
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