View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13828_high_8 (Length: 235)
Name: NF13828_high_8
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13828_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4302407 - 4302189
Alignment:
| Q |
1 |
gttcatctttatttgcccaatattacattttttcttggaccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4302407 |
gttcatctttatttgcccaatattacattttttcttgggccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagttt |
4302308 |
T |
|
| Q |
101 |
ctagtgctggctgtagcagagttacaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctcttatagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4302307 |
ctagtgctggctgtagcagagttacaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctct--tagg |
4302210 |
T |
|
| Q |
201 |
aatgtgtccatatggtgatat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4302209 |
aatgtgtccatatggtgatat |
4302189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 2163755 - 2163886
Alignment:
| Q |
24 |
tacattttttcttggaccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtttctagtgctggctgtagcagagtt |
123 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2163755 |
tacattttctcttggtccttgatacacaatttgtccatctgtgagcagtattatatcatcaaataattcataagtttctggtgctggttgtagcagagac |
2163854 |
T |
|
| Q |
124 |
acaagtgcagttccatttaggatatgaattga |
155 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| |
|
|
| T |
2163855 |
acaagtgcggttccatttagaatatggattga |
2163886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 2151481 - 2151609
Alignment:
| Q |
24 |
tacattttttcttggaccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtttctagtgctggctgtagcagagtt |
123 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||| || || | ||| |||||||| |||| ||||||||||||| ||||||| ||||| |||| |
|
|
| T |
2151481 |
tacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagagaa |
2151580 |
T |
|
| Q |
124 |
acaagtgcagttccatttaggatatgaat |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
2151581 |
acaagtgcagttccatttagaatatgaat |
2151609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 8537245 - 8537352
Alignment:
| Q |
47 |
acacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtttctagtgctggctgtagcagagttacaa-gtgcagttccatttagga |
145 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| ||| |||||| |||| ||||| |||||||||| | |
|
|
| T |
8537245 |
acacaatttgtccatctgtgagcaatatgatatcattaaataattcataagtttctggtgctggttgtcgcagag--acaatgtgcaattccatttagaa |
8537342 |
T |
|
| Q |
146 |
tatgaattga |
155 |
Q |
| |
|
|||| ||||| |
|
|
| T |
8537343 |
tatggattga |
8537352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 49100251 - 49100306
Alignment:
| Q |
152 |
ttgaagccttatcaaccaagactactgcacctagaacttctcttataggaatgtgtcc |
209 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
49100251 |
ttgaagccttttcagccaagactactgcacctagaatttctc--ctaggaatgtgtcc |
49100306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University