View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13828_high_9 (Length: 221)
Name: NF13828_high_9
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13828_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 45559582 - 45559777
Alignment:
| Q |
11 |
ttctgtttctgtttgtgcactgaactcagatggggtagcactcttgtcattcatgtcccactggacatcagttcctccttccataaactcaacatggatt |
110 |
Q |
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| T |
45559582 |
ttctgtttctgtttgtgcactgaactcagatggggtagcactcttgtcattcatgtcccactggacatcagttcctccttccataaactcaacatggatt |
45559681 |
T |
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| Q |
111 |
ccatctcattcaacaccatgctcatggaagggtgtcaaatgcaacccttccactcaccgtgtagtctctctcaacctttcctcttttaacattcat |
206 |
Q |
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| T |
45559682 |
ccatctcattcaacaccatgctcatggaagggtgtcaaatgcaacccttccactcaccgtgtagtctctctcaacctttcctcttgtaacattcat |
45559777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 46388387 - 46388273
Alignment:
| Q |
32 |
gaactcagatggggtagcactcttgtcattcatgtcccactggacatcagttcctccttccataaactcaacatggattccatctcattcaacaccatgc |
131 |
Q |
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||||||| | |||||||||||| ||||||||| ||||||||||| | ||||||| |||||||||| |||| |||| ||||| || |||||||| |
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| T |
46388387 |
gaactcaaacggggtagcactcatgtcattcaccaggcactggacatcggctcctcctcccataaactctacataaattcattctcactccacaccatgt |
46388288 |
T |
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| Q |
132 |
tcatggaagggtgtc |
146 |
Q |
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| T |
46388287 |
tcatggaagtgtgtc |
46388273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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