View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13828_low_1 (Length: 750)

Name: NF13828_low_1
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13828_low_1
NF13828_low_1
[»] chr4 (5 HSPs)
chr4 (26-471)||(1326225-1326661)
chr4 (34-375)||(4875907-4876245)
chr4 (26-225)||(44185485-44185671)
chr4 (281-375)||(44185371-44185462)
chr4 (188-331)||(20425710-20425853)
[»] chr3 (1 HSPs)
chr3 (33-371)||(5387503-5387842)
[»] scaffold0831 (1 HSPs)
scaffold0831 (75-338)||(1987-2250)
[»] chr8 (15 HSPs)
chr8 (129-332)||(26531466-26531669)
chr8 (195-320)||(18095540-18095665)
chr8 (195-323)||(18140242-18140370)
chr8 (217-323)||(27183075-27183181)
chr8 (190-299)||(12646228-12646337)
chr8 (190-311)||(12651348-12651469)
chr8 (190-311)||(12704852-12704973)
chr8 (188-308)||(12712654-12712774)
chr8 (217-284)||(27231104-27231171)
chr8 (225-322)||(31135858-31135955)
chr8 (260-311)||(6116952-6117003)
chr8 (216-323)||(18081332-18081439)
chr8 (203-320)||(12721475-12721592)
chr8 (195-311)||(12723981-12724097)
chr8 (209-323)||(37829929-37830043)
[»] chr1 (2 HSPs)
chr1 (190-320)||(17747266-17747396)
chr1 (187-284)||(51869152-51869249)
[»] chr5 (4 HSPs)
chr5 (216-331)||(24654573-24654688)
chr5 (288-331)||(29417741-29417784)
chr5 (217-324)||(42777095-42777202)
chr5 (191-256)||(9763549-9763614)
[»] chr6 (1 HSPs)
chr6 (69-108)||(29130602-29130641)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 26 - 471
Target Start/End: Complemental strand, 1326661 - 1326225
Alignment:
Q  26 tataaatctcatcctgttgaaatgaaactggccatttcaaatagaccttattctcaaatttctcaccagaaagaaaatataaattggaaccctcttgtgg 125  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| || ||||| || |  ||||| ||||||||    
T  1326661 tataaacctcatcctgttgaaatgaaactggccatttcaaattgaccctattctcaaatttgtcaccagagagcaaatacaattctgaaccttcttgtgg 1326562  T
Q  126 atgtggcaatatctctttaatgtttaggaagagatgtgtgtcattgtataatgagcgatgcatagatatgaaattggtgcgaaacatatgcatgaaataa 225  Q
    ||||||||||||||| || || || |||||||||| |||||||||||| | ||| | ||||||||||||||||||||||||||||||| |||||||||||    
T  1326561 atgtggcaatatctcctttatattaaggaagagatatgtgtcattgtacagtgaacaatgcatagatatgaaattggtgcgaaacataggcatgaaataa 1326462  T
Q  226 gggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcag 325  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326461 gggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcag 1326362  T
Q  326 gaatatagttactgttgttactaaccttgtcactttttgtagccatggatggatttctttgccaaagctgaagctaattctctgtgagtgtgcaatgcaa 425  Q
     ||||||| || |||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || ||||||| |||    
T  1326361 caatatagctagtgttg---ctaaccttgtcactttttgtagccatggatggatttctttgtcaaagctgaagccaattctctgtaagcgtgcaatccaa 1326265  T
Q  426 atatggagtgctttgttttgtgacaaacgaaacggttgggagctta 471  Q
          ||| |||||||||||||||||| ||||||||| |||||||    
T  1326264 ------agtactttgttttgtgacaaacaaaacggttgtgagctta 1326225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 34 - 375
Target Start/End: Complemental strand, 4876245 - 4875907
Alignment:
Q  34 tcatcctgttgaaatgaaactggccatttcaaatagaccttattctcaaatttctcaccagaaagaaaatataaattggaaccctcttgtggatgtggca 133  Q
    ||||| |||||||||||||||||||||||||| |  ||| |||||||||||| |||| |||| || ||||| | ||||||||| ||| ||||||||||||    
T  4876245 tcatcatgttgaaatgaaactggccatttcaatttaaccatattctcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtggca 4876146  T
Q  134 atatctctttaatgtttaggaagagatgtgtgtcattgtataatgagcgatgcatagatatgaaattggtgcgaaacatatgcatgaaataagggttttg 233  Q
    ||||||| ||||| ||||| |||||||  |||| || ||| ||||| |||||||||||||||||||||||||| ||||| | |||||||| |||||||||    
T  4876145 atatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaattggtgcggaacatgttcatgaaattagggttttg 4876046  T
Q  234 aaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatag 333  Q
    ||||||||||||| ||| |||| | |||||||||||||  |||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  4876045 aaataaaagagacgatgatttggaggcacatgtaaatcaattgagagattggaggggtaatttggaaagaatagaaaaggaaatgtcatcgggaatatag 4875946  T
Q  334 ttactgttgttactaaccttgtcactttttgtagccatggat 375  Q
     |||    ||||||||||||||||||||||||||||||||||    
T  4875945 ctac---ggttactaaccttgtcactttttgtagccatggat 4875907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 44185671 - 44185485
Alignment:
Q  26 tataaatctcatcctgttgaaatgaaactggccatttcaaatagaccttattctcaaatttctcaccagaaagaaaatataaattggaaccctcttgtgg 125  Q
    ||||||| |||||||||||||||||||||||||||||||||||             |||| |||| |||| || ||||| | ||||||||| ||| | ||    
T  44185671 tataaatatcatcctgttgaaatgaaactggccatttcaaata-------------aattcctcagcagagagcaaatacagattggaaccgtctcgagg 44185585  T
Q  126 atgtggcaatatctctttaatgtttaggaagagatgtgtgtcattgtataatgagcgatgcatagatatgaaattggtgcgaaacatatgcatgaaataa 225  Q
    ||||||| ||||||| ||||| |||||||||||||  |||| |||||| |||||||||||||||||||||||||||||| | ||||  ||||||||||||    
T  44185584 atgtggcgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgtggaacaattgcatgaaataa 44185485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 44185462 - 44185371
Alignment:
Q  281 atttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttactgttgttactaaccttgtcactttttgtagccatggat 375  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||||| |||    ||||||||||||||||||||||||||||||||||    
T  44185462 atttgaggggtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctac---ggttactaaccttgtcactttttgtagccatggat 44185371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 331
Target Start/End: Complemental strand, 20425853 - 20425710
Alignment:
Q  188 tagatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgag 287  Q
    |||||||| | || |||||||||  || |||||||| || || || |||||||||||||||||  |||||| | |||  ||||||||| | |||||| |     
T  20425853 tagatatgcagttagtgcgaaactcattcatgaaatgagagtcttcaaataaaagagaccatgcattgcatacgcattcaaatcgtttcaaagattttaa 20425754  T
Q  288 aggtaatttggaaagaatagagaaggaaatgtcatcaggaatat 331  Q
    ||| | ||| || ||||||||||| ||||| |||| ||||||||    
T  20425753 aggaagttttgacagaatagagaatgaaatatcataaggaatat 20425710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 33 - 371
Target Start/End: Complemental strand, 5387842 - 5387503
Alignment:
Q  33 ctcatcctgttgaaat--gaaactggccatttcaaatagacctta--ttctcaaatttctcaccagaaagaaaatataaattggaaccctcttgtggatg 128  Q
    ||||||||||||||||  ||||||||||||||||||| |||  ||  | || ||||| |||| |||| || ||||| | ||||||||| ||||| |||||    
T  5387842 ctcatcctgttgaaatttgaaactggccatttcaaattgacaatacctccttaaattcctcagcagagagcaaatacagattggaaccatcttgaggatg 5387743  T
Q  129 tggcaatatctctttaatgtttaggaagagatgtgtgtcattgtataatgagcgatgcatagatatgaaattggtgcgaaacatatgcatgaaataaggg 228  Q
    |||||||||||| || || | ||||| ||||   |||| ||  || ||||||||||||||| |||||||||||||||| ||||  |||||||||| ||||    
T  5387742 tggcaatatctcctttatatataggatgagaaaggtgtgatcatacaatgagcgatgcataaatatgaaattggtgcggaacaattgcatgaaattaggg 5387643  T
Q  229 ttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaa 328  Q
    |||||||||||||||||||| | |||| | ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| | ||    
T  5387642 ttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaaggaaatgtcatcggaaa 5387543  T
Q  329 tatagttactgttgttactaaccttgtcactttttgtagccat 371  Q
    |||||||||   |||||||||||||||||||||||||||||||    
T  5387542 tatagttac---tgttactaaccttgtcactttttgtagccat 5387503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 75 - 338
Target Start/End: Original strand, 1987 - 2250
Alignment:
Q  75 attctcaaatttctcaccagaaagaaaatataaattggaaccctcttgtggatgtggcaatatctctttaatgtttaggaagagatgtgtgtcattgtat 174  Q
    ||||||||| |||||| |||| || ||||| ||| ||||||| | |||   || ||||| |||||| || || |||||||| |||  ||||||||||||     
T  1987 attctcaaacttctcatcagagaggaaatacaaagtggaaccatgttgatcatatggcagtatctcctttatatttaggaaaagacatgtgtcattgtac 2086  T
Q  175 aatgagcgatgcatagatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtt 274  Q
    ||||| ||||||||| ||||||||||| |||||||||| | |||||||| ||| | || |||||||||||||||||  ||||||||||| |||||||| |    
T  2087 aatgatcgatgcataaatatgaaattgttgcgaaacattttcatgaaatgaggatcttcaaataaaagagaccatgacttgcatgcacaagtaaatcgct 2186  T
Q  275 tgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaatatagttact 338  Q
    |||||||||| ||||||| |||||| | ||||  ||||||||  || ||||||| |||||||||    
T  2187 tgagagatttaagaggtagtttggagaaaataacgaaggaaacatcgtcaggaacatagttact 2250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 129 - 332
Target Start/End: Complemental strand, 26531669 - 26531466
Alignment:
Q  129 tggcaatatctctttaatgtttaggaagagatgtgtgtcattgtataatgagcgatgcatagatatgaaattggtgcgaaacatatgcatgaaataaggg 228  Q
    |||| ||||||| || || ||||| |||||||  ||||  ||||| |||||  |||||||||||||||||||  |||| ||||||| ||| |||  ||||    
T  26531669 tggccatatctcctttatatttagaaagagataagtgttgttgtacaatgactgatgcatagatatgaaatttttgcggaacatattcataaaactaggg 26531570  T
Q  229 ttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcaggaa 328  Q
    |||| ||||||||||||||||| |||||| ||||| ||||| || |||||||||||||| | || ||| || | ||||  ||||||||  || |||||||    
T  26531569 ttttcaaataaaagagaccatgatttgcacgcacaagtaaaccgcttgagagatttgagggatagtttagagaaaataatgaaggaaacatcttcaggaa 26531470  T
Q  329 tata 332  Q
    ||||    
T  26531469 tata 26531466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 18095665 - 18095540
Alignment:
Q  195 gaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaat 294  Q
    |||||||||||| ||||| | |||||||| ||||||||| || | ||| ||||||| ||||   ||||| || || |||||||| |||||||||||||||    
T  18095665 gaaattggtgcggaacatgttcatgaaattagggttttggaaaagaagtgaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 18095566  T
Q  295 ttggaaagaatagagaaggaaatgtc 320  Q
    ||||| ||||| ||||| | ||||||    
T  18095565 ttggagagaatggagaaagcaatgtc 18095540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 18140242 - 18140370
Alignment:
Q  195 gaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaat 294  Q
    |||||||||||| ||||| | |||||||| ||||||||| |||||||| ||||||| |||    ||||| ||||| |||||||||||||| | ||| |||    
T  18140242 gaaattggtgcggaacatgttcatgaaattagggttttggaataaaagtgaccatgattttttagcacaggtaaaacgtttgagagatttaataggcaat 18140341  T
Q  295 ttggaaagaatagagaaggaaatgtcatc 323  Q
    || || ||||| ||||| | |||||||||    
T  18140342 ttagagagaatggagaaagcaatgtcatc 18140370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 27183181 - 27183075
Alignment:
Q  217 atgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaa 316  Q
    ||||||| |||||||||||||||||||||||||| |||| |  |||| |||||||| ||||||||||| | ||| | ||| || |||||||| || | ||    
T  27183181 atgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagatttaatagggagtttagagagaatagataaagcaa 27183082  T
Q  317 tgtcatc 323  Q
    |||||||    
T  27183081 tgtcatc 27183075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 299
Target Start/End: Complemental strand, 12646337 - 12646228
Alignment:
Q  190 gatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagag 289  Q
    ||||||||||| ||||| ||||  | |||||||| ||||||||||||||||||||||||||||||    ||||| || |||| | |||| ||||| ||||    
T  12646337 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagag 12646238  T
Q  290 gtaatttgga 299  Q
    | ||||||||    
T  12646237 gcaatttgga 12646228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 12651469 - 12651348
Alignment:
Q  190 gatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagag 289  Q
    ||||||||||| ||||| ||||  | |||||||| |||||||||||||||||||||||||  |||    ||||| || | |||| |||||||||| ||||    
T  12651469 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccattatttcttagcacaggtgagtcgtgtgagagatttaagag 12651370  T
Q  290 gtaatttggaaagaatagagaa 311  Q
    | |||||||| || ||||||||    
T  12651369 gcaatttggagagtatagagaa 12651348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 12704973 - 12704852
Alignment:
Q  190 gatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagag 289  Q
    |||||||||||||| || ||||| | ||| |||| |||| ||||||||||||| ||  ||| |||     ||||||| ||||||||||| ||||| ||||    
T  12704973 gatatgaaattggttcggaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtttgagggatttaagag 12704874  T
Q  290 gtaatttggaaagaatagagaa 311  Q
    | ||||||||||||||||||||    
T  12704873 gcaatttggaaagaatagagaa 12704852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 188 - 308
Target Start/End: Original strand, 12712654 - 12712774
Alignment:
Q  188 tagatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgag 287  Q
    ||||||| |||||||| |||||||| | ||| |||| |||| ||||||||||||| ||  ||| |||     ||||||| ||||||||||| ||||||||    
T  12712654 tagatattaaattggtacgaaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtttgagtgatttgag 12712753  T
Q  288 aggtaatttggaaagaataga 308  Q
    ||| | |||||||||||||||    
T  12712754 aggcagtttggaaagaataga 12712774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 27231104 - 27231171
Alignment:
Q  217 atgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagattt 284  Q
    ||||||| |||||||||||||||||||||||||| |||| |  |||| |||||||| |||||||||||    
T  27231104 atgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt 27231171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 31135858 - 31135955
Alignment:
Q  225 agggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcat 322  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||| || |   |||| | ||| || ||||| | ||||||||||||||| ||||    
T  31135858 agggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggcaacttggagataatagagaaggaaatatcat 31135955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 6117003 - 6116952
Alignment:
Q  260 cacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaa 311  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  6117003 cacatgtgaatcgtttgagggatttaagaggcaatttggaaagaatagagaa 6116952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 18081439 - 18081332
Alignment:
Q  216 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 315  Q
    |||||||| |||||||||||| | ||||||||||| |||    ||||| || || ||| |||||||||||  ||||||||| |||||||| ||||| | |    
T  18081439 catgaaattagggttttgaaaaagaagagaccatgattttttagcacaagtgaaacgtgtgagagatttgtaaggtaatttagaaagaatggagaaagca 18081340  T
Q  316 atgtcatc 323  Q
    ||||||||    
T  18081339 atgtcatc 18081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 320
Target Start/End: Complemental strand, 12721592 - 12721475
Alignment:
Q  203 tgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaag 302  Q
    |||| ||||||| ||||||   ||||||||| ||||||||| |||||| |||     |||| || ||||||||||||||||| || || |||||||| ||    
T  12721592 tgcggaacatattcatgaatatagggttttggaataaaagaaaccatgattttttaacacaagtgaatcgtttgagagatttaagcggcaatttggagag 12721493  T
Q  303 aatagagaaggaaatgtc 320  Q
    ||||||||| | ||||||    
T  12721492 aatagagaaagcaatgtc 12721475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 12724097 - 12723981
Alignment:
Q  195 gaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaat 294  Q
    |||||||||||| ||||| | |||||||  || |||||| || ||||||||||||| |||    ||||| || || ||| |||||||||| ||||| |||    
T  12724097 gaaattggtgcggaacatgttcatgaaaatagagttttggaacaaaagagaccatgatttttgagcacaagtgaaacgtgtgagagatttaagaggcaat 12723998  T
Q  295 ttggaaagaatagagaa 311  Q
    ||||| ||||| |||||    
T  12723997 ttggagagaattgagaa 12723981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 37830043 - 37829929
Alignment:
Q  209 acatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaataga 308  Q
    |||||| ||||||| |||||||||| |||||||||||| |||||||     | || ||||| ||| |||| ||||| ||||| |||||||| |||||| |    
T  37830043 acatattcatgaaaaaagggttttggaataaaagagacaatggtttttgaacgcaagtaaaacgtgtgagggatttaagaggcaatttggagagaataaa 37829944  T
Q  309 gaaggaaatgtcatc 323  Q
    ||  | |||||||||    
T  37829943 gattgcaatgtcatc 37829929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 17747396 - 17747266
Alignment:
Q  190 gatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagag 289  Q
    |||||||||||| | |||||||||| |||||||||| | ||||| || | || |||||||| |||    ||||||||||||| | |||||||||| | ||    
T  17747396 gatatgaaattgtttcgaaacatattcatgaaataaagcttttggaaaagaaaagaccatgattttttagcacatgtaaatcatgtgagagatttaatag 17747297  T
Q  290 gtaatttggaaagaatagagaaggaaatgtc 320  Q
    | | |||||| ||||||||||| | ||||||    
T  17747296 gcagtttggagagaatagagaaagcaatgtc 17747266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 51869249 - 51869152
Alignment:
Q  187 atagatatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagattt 284  Q
    |||||||||||||| ||||  ||  | | |||||||| ||||| || |||||| ||||||||||||||| ||||||||  ||||||||| | ||||||    
T  51869249 atagatatgaaattagtgcagaagttgttcatgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattt 51869152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 24654688 - 24654573
Alignment:
Q  216 catgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaa 315  Q
    ||||||||||||||| |  |||||||| ||||||| ||| | | ||||   ||| || ||||  ||||| | ||||||||||||||||||||||||||||    
T  24654688 catgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaatagagaaggaa 24654589  T
Q  316 atgtcatcaggaatat 331  Q
    |  |||| ||||||||    
T  24654588 agatcattaggaatat 24654573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 29417741 - 29417784
Alignment:
Q  288 aggtaatttggaaagaatagagaaggaaatgtcatcaggaatat 331  Q
    |||||||||||||||||||||||||||||  |||| ||||||||    
T  29417741 aggtaatttggaaagaatagagaaggaaagatcattaggaatat 29417784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 42777202 - 42777095
Alignment:
Q  217 atgaaataagggttttgaaataaaagagaccatggtttgcatgcacatgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaa 316  Q
    ||||||| |||||| | |||||| |||||||||| ||||||  |||||  ||||||||||   ||||| | ||||||||| || ||||||||||| | ||    
T  42777202 atgaaattagggttatcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaa 42777103  T
Q  317 tgtcatca 324  Q
    | ||||||    
T  42777102 tatcatca 42777095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 9763614 - 9763549
Alignment:
Q  191 atatgaaattggtgcgaaacatatgcatgaaataagggttttgaaataaaagagaccatggtttgc 256  Q
    |||||| ||||||||||||||| | ||| |||  |||||||| ||| ||||||||||||| |||||    
T  9763614 atatgagattggtgcgaaacatgttcataaaaatagggttttcaaacaaaagagaccatgatttgc 9763549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 29130641 - 29130602
Alignment:
Q  69 gaccttattctcaaatttctcaccagaaagaaaatataaa 108  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  29130641 gaccttattctcaaaattctcaccagaaagagaatataaa 29130602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University