View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13828_low_13 (Length: 210)

Name: NF13828_low_13
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13828_low_13
NF13828_low_13
[»] chr4 (2 HSPs)
chr4 (54-198)||(33396659-33396803)
chr4 (107-187)||(33401756-33401836)
[»] scaffold0536 (1 HSPs)
scaffold0536 (82-179)||(10586-10683)
[»] chr7 (2 HSPs)
chr7 (141-174)||(41545687-41545720)
chr7 (75-124)||(26155952-26156001)
[»] chr6 (1 HSPs)
chr6 (142-196)||(13695614-13695668)
[»] chr1 (1 HSPs)
chr1 (141-174)||(27224166-27224199)
[»] chr5 (1 HSPs)
chr5 (142-174)||(20156851-20156883)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 54 - 198
Target Start/End: Original strand, 33396659 - 33396803
Alignment:
Q  54 atcttaactatatcactcaaaaactttgcattgtaaaattgttcaccatacattggccatgtcaccattggtaaccctgcactcactccttccaatgttg 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33396659 atcttaactatatcactcaaaaactttgcattgtaaaattgttcaccatacattggccatgtcaccattggtaaccctgcactcactccttccaatgttg 33396758  T
Q  154 aattccatccacaatgtgtcacaaaccctccaactgattcatgat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33396759 aattccatccacaatgtgtcacaaaccctccaactgattcatgat 33396803  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 33401756 - 33401836
Alignment:
Q  107 tggccatgtcaccattggtaaccctgcactcactccttccaatgttgaattccatccacaatgtgtcacaaaccctccaac 187  Q
    |||||| ||| |||| ||||  || |||| ||| ||||| || ||||| |||||||||||||| |||| ||||||||||||    
T  33401756 tggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatccacaatgagtcataaaccctccaac 33401836  T

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Target: scaffold0536 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 10683 - 10586
Alignment:
Q  82 cattgtaaaattgttcaccatacattggccatgtcaccattggtaaccctgcactcactccttccaatgttgaattccatccacaatgtgtcacaaac 179  Q
    |||||||||||||||| |||| ||||||||| || | |||||| | ||||||||| ||  | ||||  || |||||||| ||||||||||||| ||||    
T  10683 cattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataaac 10586  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 41545720 - 41545687
Alignment:
Q  141 ccttccaatgttgaattccatccacaatgtgtca 174  Q
    ||||||||||||||||||||||||||||||||||    
T  41545720 ccttccaatgttgaattccatccacaatgtgtca 41545687  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 26156001 - 26155952
Alignment:
Q  75 aactttgcattgtaaaattgttcaccatacattggccatgtcaccattgg 124  Q
    |||||| ||||||||||||| |||||| ||||||||||||| | ||||||    
T  26156001 aacttttcattgtaaaattgatcaccaaacattggccatgtaatcattgg 26155952  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 13695614 - 13695668
Alignment:
Q  142 cttccaatgttgaattccatccacaatgtgtcacaaaccctccaactgattcatg 196  Q
    ||||||||||||||||||| ||||||||||| ||||| | |||||| | ||||||    
T  13695614 cttccaatgttgaattccaaccacaatgtgttacaaaacatccaacagcttcatg 13695668  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 27224166 - 27224199
Alignment:
Q  141 ccttccaatgttgaattccatccacaatgtgtca 174  Q
    |||||||||||||||||||| |||||||||||||    
T  27224166 ccttccaatgttgaattccaaccacaatgtgtca 27224199  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 20156851 - 20156883
Alignment:
Q  142 cttccaatgttgaattccatccacaatgtgtca 174  Q
    |||| ||||||||||||||||||||||||||||    
T  20156851 cttctaatgttgaattccatccacaatgtgtca 20156883  T

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