View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13828_low_3 (Length: 483)
Name: NF13828_low_3
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13828_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 29042775 - 29042514
Alignment:
| Q |
10 |
ggactagttgctaattttgttggagaagccataaaagatgatgctatttttggctctgaatcttctgatatattcctccagaacaagaacagtgttttct |
109 |
Q |
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| T |
29042775 |
ggactagttgctaattttgttggagaagccataaaagatgatgctatttttggctctgaatcttctgatatattcctccagaacaagaacagtgttttct |
29042676 |
T |
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| Q |
110 |
ttgacaaacaacaaggtacaccactatctcttgttttttagtatgtactatatatagtatcctcctaactgagaggattaacaaaagataannnnnnnnn |
209 |
Q |
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| T |
29042675 |
ttgacaaacaacaaggtacaccactatctcttgttttttagtatgtactatatatagtatcctcctaattgagaggattaacaaaagat----------- |
29042587 |
T |
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| Q |
210 |
nnnnnnnaaaatttgtttgattatattaaatcatagttttaatgtggttgttgctgcatcactctcaattagactagtttaatt |
293 |
Q |
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| T |
29042586 |
---------aattt--ttgattatattaaatcatagttttaatgtggttgttgctgcatcactctcaattagactagtttaatt |
29042514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 390 - 472
Target Start/End: Complemental strand, 29042336 - 29042254
Alignment:
| Q |
390 |
tgtttgtgtaggtaaatgcattactagatctataatggtgttcctgaccttaaattgtcttgcttggcttttcttatgagtat |
472 |
Q |
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| T |
29042336 |
tgtttgtgtaggtaaatgcattactagatctataatggtgttcctgaccttaaattgtcttgcttggcttttcttatgagtat |
29042254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 29042481 - 29042379
Alignment:
| Q |
292 |
ttgtttgattatattaaatcaaatttaagttttaaaggttagtgttaattttttgtgacatatat----tagtactagtttaattgttacagtttctcaa |
387 |
Q |
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| T |
29042481 |
ttgtttgattatattaaatcaaatttaagttttaaaggttattgttaattttttttgacatatattagttagtactagtttaattgttacagtttctcaa |
29042382 |
T |
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| Q |
388 |
ttt |
390 |
Q |
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||| |
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| T |
29042381 |
ttt |
29042379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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