View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13828_low_4 (Length: 463)
Name: NF13828_low_4
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13828_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 118 - 431
Target Start/End: Complemental strand, 48176487 - 48176185
Alignment:
| Q |
118 |
aactattaataaagtatttttcttttaatgaaaaataatctgaaagcatacgaagctggtgctctcagctgggccctttgttgatttagatttattttag |
217 |
Q |
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| T |
48176487 |
aactattaataaagtattttt-ttttaatgaaaaataatctgaaagcatacgaagctggtgctctcagctgggccctttgt--at---gatttattttag |
48176394 |
T |
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| Q |
218 |
gaagaaaagaagtaaatgaataaacgagaaatnnnnnnn-gaggcaattggattatagaataatcacttgtttttatcaattgatatatcattttcaatt |
316 |
Q |
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| T |
48176393 |
gaagaaaagaagtaaatgaataaacgagaaataaaaaaaagaggcaattggattatagaataatcacttgtttttatcaattgatatatcattttcaatt |
48176294 |
T |
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| Q |
317 |
tccagggtccagagacagcgacccaccaagctgccctcttacccaaccagccatagccatcattgattcatgattcttctcaagaccatccccccaaaag |
416 |
Q |
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| T |
48176293 |
tccagggtccagagacagcaacccaccaagctgccctcttacccaaccag------ccatcattgattcatgattcttctcaagaccatccccccaaaag |
48176200 |
T |
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| Q |
417 |
gattttgaatagcta |
431 |
Q |
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||||||||||||||| |
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| T |
48176199 |
gattttgaatagcta |
48176185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 48176674 - 48176534
Alignment:
| Q |
1 |
gggtcaagacaaaagaaacatcattgcaagatcaacaatgttactattggtcaaaagaaatcaaacgaggctatgctataataagtcgaatcggcattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
48176674 |
gggtcaagacaaaagaaacatcattgcaagatcaacaatgttactattggtcaaaagaaatcaaacaaggctatgctataataagtcgaaccggcattga |
48176575 |
T |
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| Q |
101 |
ccaatatgagaatagacaactattaataaagtatttttctt |
141 |
Q |
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| T |
48176574 |
ccaatatgagaatagacaactattaataaagtatttttctt |
48176534 |
T |
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