View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13828_low_8 (Length: 361)

Name: NF13828_low_8
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13828_low_8
NF13828_low_8
[»] chr6 (3 HSPs)
chr6 (17-357)||(32095071-32095411)
chr6 (43-89)||(15948724-15948770)
chr6 (22-128)||(35222242-35222348)
[»] chr7 (6 HSPs)
chr7 (22-346)||(21502955-21503279)
chr7 (19-89)||(22908000-22908070)
chr7 (51-92)||(12352798-12352839)
chr7 (43-98)||(3207159-3207214)
chr7 (29-62)||(34233031-34233064)
chr7 (232-296)||(4569518-4569582)
[»] chr4 (2 HSPs)
chr4 (19-346)||(48211439-48211766)
chr4 (19-346)||(46389690-46390017)
[»] chr1 (1 HSPs)
chr1 (41-341)||(23266163-23266463)
[»] scaffold0006 (1 HSPs)
scaffold0006 (22-346)||(204965-205290)
[»] scaffold0068 (2 HSPs)
scaffold0068 (184-346)||(7158-7320)
scaffold0068 (19-125)||(11524-11630)
[»] chr5 (3 HSPs)
chr5 (19-125)||(21702280-21702386)
chr5 (184-346)||(21706590-21706752)
chr5 (246-296)||(16983697-16983747)
[»] chr3 (2 HSPs)
chr3 (136-206)||(10982895-10982965)
chr3 (22-95)||(44493034-44493107)
[»] chr2 (1 HSPs)
chr2 (25-95)||(33347916-33347986)
[»] scaffold0530 (1 HSPs)
scaffold0530 (43-89)||(9733-9779)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 32095071 - 32095411
Alignment:
Q  17 ccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcaga 116  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32095071 ccatcattttaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcaga 32095170  T
Q  117 agctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctact 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32095171 agctagaggtgaaatcaatggagcaaaaatctgcaacaatgctccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctact 32095270  T
Q  217 tcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcagga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  32095271 tcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtcaatctccaaaagtcggaatttttttgtagcagga 32095370  T
Q  317 atgtttcaagggctgatcataataatatagtgaatattctt 357  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  32095371 atgtttcaagggctgatcataataatatagcgaatattctt 32095411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 15948724 - 15948770
Alignment:
Q  43 caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg 89  Q
    |||||||||||| |||||||||||||||| ||| ||||||| |||||    
T  15948724 caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg 15948770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 35222348 - 35222242
Alignment:
Q  22 attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagcta 121  Q
    ||||||||| ||||  | || ||||| || ||| |||| ||||| || ||||||||||||||||||||  | ||| | || |||||||| ||||||||||    
T  35222348 attccaggtcgaggactaagacaaggagatcctttgtcgccatacttattcattatttgtgcagaaggactttcctctttaattcggaaggcagaagcta 35222249  T
Q  122 gaggtga 128  Q
    | |||||    
T  35222248 gtggtga 35222242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 346
Target Start/End: Original strand, 21502955 - 21503279
Alignment:
Q  22 attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagcta 121  Q
    ||||| |||||||| |||||||| || |||||| | ||||| ||| | || ||||||||||||||||| ||||||||  | |||||||||||| |||| |    
T  21502955 attcctggtagaggcttgaggcagggagaccctttatcaccgtatctttttattatttgtgcagaaggtttatccgcgcttattcggaaagcataagcaa 21503054  T
Q  122 gaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaa 221  Q
    |||| ||||| ||||| |  ||  | || || | ||  || || || |  ||||| || || ||| |||| || || |||||||| | ||||||||||||    
T  21503055 gaggagaaattaatggtgtgaaggtttgtaatattgcgcccattatatcacatctactttttgcagatgactgtttcttattttttcatgctacttcaaa 21503154  T
Q  222 tcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtt 321  Q
    ||||||  |||||||||||| |||| |||| | ||||||||||| ||||||||||||||||||||||||||||||  |||| ||||||||||| ||||||    
T  21503155 tcaagctttgaaaatgagaaatattctatcaacttatgagaaagtgtcaggtcaagcggttaatctccaaaagtcataaatcttttgtagcagaaatgtt 21503254  T
Q  322 tcaagggctgatcataataatatag 346  Q
    ||||   ||||||||||||||||||    
T  21503255 tcaacaactgatcataataatatag 21503279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 22908000 - 22908070
Alignment:
Q  19 atcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg 89  Q
    ||||||||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||||||| |||||    
T  22908000 atcattccaggaagaggtttaagacaaggagacccactatccccatatttgtttattatttgtgctgaagg 22908070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 12352839 - 12352798
Alignment:
Q  51 ccctctgtcaccatatttgttcattatttgtgcagaagggtt 92  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  12352839 ccctctgtcaccatatttgtacattatttgtgctgaagggtt 12352798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 3207214 - 3207159
Alignment:
Q  43 caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgc 98  Q
    ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||||||||    
T  3207214 caaggggaccctctttctccatacttgtttattatttgtgcagaaggtttatccgc 3207159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 34233064 - 34233031
Alignment:
Q  29 gtagaggtttgaggcaaggtgaccctctgtcacc 62  Q
    |||| |||||||||||||||||||||||||||||    
T  34233064 gtaggggtttgaggcaaggtgaccctctgtcacc 34233031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 4569518 - 4569582
Alignment:
Q  232 aaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtc 296  Q
    ||||||| || |||||||||||||||||||| || |||| || |||  | |||||||||||||||    
T  4569518 aaaatgaaaaatattttatccatttatgagagagtgtcatgttaagacgctaatctccaaaagtc 4569582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 48211439 - 48211766
Alignment:
Q  19 atcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaag 118  Q
    |||||||| |||||||| |||||||||||||| ||  | ||||| || ||||| ||||| |||||||||||| |||| ||| | ||||||||||||||||    
T  48211439 atcattcctggtagaggcttgaggcaaggtgatccattatcaccgtacttgtttattatctgtgcagaagggctatcagcactcattcggaaagcagaag 48211538  T
Q  119 ctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctacttc 218  Q
    | ||||| || || ||||| |  ||| |||| || |||| ||| || || |  || || || || ||| ||||||||||  | ||||| ||||||| ||     
T  48211539 caagaggggatattaatggtgtgaaagtctgtaataatgctcccataatatcacacctcctttttgcagatgattgcttcctgttttttcgtgctaattt 48211638  T
Q  219 aaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaat 318  Q
     ||  ||||||  |||||||||| |||| | ||  ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  48211639 gaacaaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagctgttaatctccaaaagtcagaatttttttgtagcaggaat 48211738  T
Q  319 gtttcaagggctgatcataataatatag 346  Q
    ||||||   ||||||||||| |||||||    
T  48211739 gtttcaccagctgatcataaaaatatag 48211766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 46390017 - 46389690
Alignment:
Q  19 atcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaag 118  Q
    |||||||| |||||||| |||||||||||||| ||  | |||||  | ||||| ||||| |||||||||||| ||||  || | |||| |||||||||||    
T  46390017 atcattcctggtagaggcttgaggcaaggtgatccattatcaccgcacttgtttattatatgtgcagaagggctatcaacactaattcagaaagcagaag 46389918  T
Q  119 ctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctacttc 218  Q
    | ||||| || || ||||| |  ||  |||| || |||| ||| || || |  || || || || ||| ||||  |||| || |||||  |||||| |||    
T  46389917 caagaggggatattaatggtgtgaaggtctgtaataatgctcccataatatcacacctcctttttgcagatgaccgcttcttgtttttttgtgctaattc 46389818  T
Q  219 aaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaat 318  Q
     || |||||||  |||||||||| |||||| ||  ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  46389817 gaaccaagcacaaaaaatgagaaatattttgtcagtttatgagaaagcgtcaggtcaagctgttaatctccaaaagtcataaattttttgtagcaggaat 46389718  T
Q  319 gtttcaagggctgatcataataatatag 346  Q
    ||||||  || |||||||||||||||||    
T  46389717 gtttcatcggttgatcataataatatag 46389690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 41 - 341
Target Start/End: Complemental strand, 23266463 - 23266163
Alignment:
Q  41 ggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagc 140  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||  | ||||| |||||||||||||||||||| || ||||| |     
T  23266463 ggcaaggtgaccctttgtcaccgtatttgtttattatttgtgcagaagggttatctgctcttattcgaaaagcagaagctagaggtgatattaatggggt 23266364  T
Q  141 aaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgaga 240  Q
     ||||||||||||||||  || |||||||  ||||| ||||| ||| |||| ||||| |||||||| ||||| |||   |  ||||   ||||||||||     
T  23266363 taaaatctgcaacaatgcgcctatcatttcacatctcctctttgcagatgactgcttcttattttttcgtgcaactcagaggcaagatttgaaaatgagg 23266264  T
Q  241 agtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataata 340  Q
      ||||||||| |||||| |||| || |||||||||||  | || || |||||||| ||||| ||||| ||| |||||||| |||  |||||||||||||    
T  23266263 gatattttatctatttataagaaggcatcaggtcaagctatcaaccttcaaaagtctgaaatattttgcagccggaatgttccaactgctgatcataata 23266164  T
Q  341 a 341  Q
    |    
T  23266163 a 23266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 346
Target Start/End: Complemental strand, 205290 - 204965
Alignment:
Q  22 attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagcta 121  Q
    ||||| |||||||| |||||||| || |||||  | ||||||||| | || ||||||||||||||||| |||| |||  | ||||||||||| ||||| |    
T  205290 attcctggtagaggcttgaggcagggagaccccttatcaccatatctttttattatttgtgcagaaggtttattcgcgcttattcggaaagctgaagcaa 205191  T
Q  122 gaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttc-cgtgctacttcaa 220  Q
    |||| ||||| ||||| |  ||  | || || ||||  || || || |  ||||| || || ||| | || || || ||||||||  | |||||||||||    
T  205190 gaggagaaatgaatggtgtgaaggtttgtaataatgcgcccattatatcacatctactttttgcagacgactgtttcttatttttttcatgctacttcaa 205091  T
Q  221 atcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgt 320  Q
    |||||||  |||||||||||| |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||| |||||    
T  205090 atcaagctttgaaaatgagaaatattctatcaacttatgagaaagcgtcaggtcaagcggttaatctcaaaaagtcagaagtcttttgtagcagaaatgt 204991  T
Q  321 ttcaagggctgatcataataatatag 346  Q
    |||||  |||||||||||||||||||    
T  204990 ttcaacagctgatcataataatatag 204965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 346
Target Start/End: Complemental strand, 7320 - 7158
Alignment:
Q  184 gcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtta 283  Q
    |||||||| ||||| || ||||| ||||||| ||| || |||||||  |||||||||| |||| | ||  ||||||||||||||||||||||||  ||||    
T  7320 gcatatgactgcttcttgttttttcgtgctaattcgaaccaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagatgtta 7221  T
Q  284 atctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatag 346  Q
    |||||||||||||  |||    |||||||| |||| |||||   |||||||||||||||||||    
T  7220 atctccaaaagtcaaaaaaaaattgtagcaagaatttttcaccagctgatcataataatatag 7158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 11630 - 11524
Alignment:
Q  19 atcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaag 118  Q
    |||||||| |||||||| |||||||||||||| ||  ||||||| || ||||| |||||||||||||||||| |||| ||| | ||||||||||||||||    
T  11630 atcattcctggtagaggcttgaggcaaggtgatccattgtcaccgtacttgtttattatttgtgcagaagggctatcagcactcattcggaaagcagaag 11531  T
Q  119 ctagagg 125  Q
    | |||||    
T  11530 caagagg 11524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 21702280 - 21702386
Alignment:
Q  19 atcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaag 118  Q
    |||||||| |||||||| |||||||||||||| ||  ||||||| || ||||| |||||||||||||||||| |||| ||| | ||||||||||||||||    
T  21702280 atcattcctggtagaggcttgaggcaaggtgatccattgtcaccgtacttgtttattatttgtgcagaagggctatcagcactcattcggaaagcagaag 21702379  T
Q  119 ctagagg 125  Q
    | |||||    
T  21702380 caagagg 21702386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 346
Target Start/End: Original strand, 21706590 - 21706752
Alignment:
Q  184 gcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtta 283  Q
    |||||||| ||||| || ||||| ||||||| ||| || |||||||  |||||||||| |||| | ||  ||||||||||||||||||||||||  ||||    
T  21706590 gcatatgactgcttcttgttttttcgtgctaattcgaaccaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagatgtta 21706689  T
Q  284 atctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatag 346  Q
    |||||||||||||  |||    |||||||| |||| |||||   |||||||||||||||||||    
T  21706690 atctccaaaagtcaaaaaaaaattgtagcaagaatttttcaccagctgatcataataatatag 21706752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 16983697 - 16983747
Alignment:
Q  246 tttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtc 296  Q
    |||||||| |||||||||||| ||||||||||||||||||||  |||||||    
T  16983697 tttatccacttatgagaaagcttcaggtcaagcggttaatcttaaaaagtc 16983747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 10982965 - 10982895
Alignment:
Q  136 ggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttattttt 206  Q
    ||||| ||||||||||| |||| |||||| |||| |||||| ||||| ||| ||||||||||| |||||||    
T  10982965 ggagctaaaatctgcaataatgctccaattatttcgcatctgctctttgcagatgattgctttctattttt 10982895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 44493034 - 44493107
Alignment:
Q  22 attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc 95  Q
    ||||||||  ||||| |||| ||||| ||||| || || |||||||||||||||||||| || ||||| |||||    
T  44493034 attccagggcgaggtctgagacaaggggacccgctttccccatatttgttcattatttgcgcggaaggtttatc 44493107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 33347916 - 33347986
Alignment:
Q  25 ccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc 95  Q
    ||||||||||| ||||| |||||||||||||| ||||| ||| | || || || |||||||||||||||||    
T  33347916 ccaggtagagggttgagacaaggtgaccctctttcaccttatctctttatcatatgtgcagaagggttatc 33347986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 9733 - 9779
Alignment:
Q  43 caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg 89  Q
    |||||||||||| |||||||||||||||| ||| ||||||| |||||    
T  9733 caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg 9779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University