View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13828_low_9 (Length: 312)

Name: NF13828_low_9
Description: NF13828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13828_low_9
NF13828_low_9
[»] chr5 (11 HSPs)
chr5 (22-303)||(13447020-13447301)
chr5 (22-303)||(13419469-13419750)
chr5 (22-303)||(13426360-13426641)
chr5 (22-298)||(13413124-13413400)
chr5 (66-306)||(13388994-13389234)
chr5 (191-306)||(13385173-13385288)
chr5 (192-301)||(13454143-13454252)
chr5 (39-138)||(13453990-13454089)
chr5 (66-145)||(13393562-13393641)
chr5 (24-155)||(13379009-13379140)
chr5 (230-303)||(13393404-13393477)
[»] chr4 (2 HSPs)
chr4 (22-158)||(47601291-47601427)
chr4 (261-306)||(47601530-47601575)
[»] chr8 (1 HSPs)
chr8 (24-155)||(28430528-28430659)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 13447020 - 13447301
Alignment:
Q  22 gactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447020 gactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 13447119  T
Q  122 gtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447120 gtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattt 13447219  T
Q  222 tcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 303  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447220 tcgcaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 13447301  T

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Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 13419469 - 13419750
Alignment:
Q  22 gactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 121  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13419469 gactatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 13419568  T
Q  122 gtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattt 221  Q
    ||||||| |||||||||| ||||  |||||||||||| ||||  ||    ||||    ||| || | | |||||||||||||| |||||| |||||||||    
T  13419569 gtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattt 13419668  T
Q  222 tcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 303  Q
    |  || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||    
T  13419669 tggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttctactttgcttccaacct 13419750  T

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Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 13426360 - 13426641
Alignment:
Q  22 gactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 121  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13426360 gactatacactgtgactccagcgcaaagaagaggaccggcaacatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattga 13426459  T
Q  122 gtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattt 221  Q
    ||||||  |||||||||| ||||   ||||||||||| ||||| ||    ||||    || | || || |||||||||||||| ||| || |||||||||    
T  13426460 gtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattt 13426559  T
Q  222 tcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 303  Q
    || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  13426560 tcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacct 13426641  T

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Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 13413124 - 13413400
Alignment:
Q  22 gactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 121  Q
    ||||||| || ||||| ||||| ||||| |||||||| |||   |||||||||| | | |||||||||||||||||||||||||||||||||||||||||    
T  13413124 gactatatacggtgacaccagcacaaaggagaggaccagcaaattcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 13413223  T
Q  122 gtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattt 221  Q
    ||||||| |||||||||| ||||  || ||||||||| ||||  ||    ||||      | |||||| |||||||||||||| || |||   ||||| |    
T  13413224 gtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatct 13413323  T
Q  222 tcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcc 298  Q
    |  || || ||||||||||||| || ||| || || |||||||||||||||||||||||||| |  |||||||||||    
T  13413324 tggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaacttctccactttgcttcc 13413400  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 306
Target Start/End: Complemental strand, 13389234 - 13388994
Alignment:
Q  66 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac 165  Q
    ||||| ||||| | |||||||||| ||| ||| |||| ||| |||||||||| |||||| ||  |||||||||| ||| | || ||||| ||| ||||      
T  13389234 tcaagtggtaatccatcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttgg 13389135  T
Q  166 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 265  Q
    ||    ||||   |||| || |||  |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||    
T  13389134 caccacatgtgaaagtaaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctacttt 13389035  T
Q  266 gtctccaactttaaacttttttactttgcttcccacctttg 306  Q
    ||||||||| || ||||||| ||||||||||||||||||||    
T  13389034 gtctccaacattgaacttttctactttgcttcccacctttg 13388994  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 13385288 - 13385173
Alignment:
Q  191 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 290  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  291 ttgcttcccacctttg 306  Q
    ||||||||||||||||    
T  13385188 ttgcttcccacctttg 13385173  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 13454143 - 13454252
Alignment:
Q  192 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 291  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  292 tgcttcccac 301  Q
    ||||||||||    
T  13454243 tgcttcccac 13454252  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 13453990 - 13454089
Alignment:
Q  39 ccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 138  Q
    ||||| ||||| |||||| | ||  |||||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13453990 ccagcacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
Q  66 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 145  Q
    ||||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393641 tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 13379009 - 13379140
Alignment:
Q  24 ctatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagt 123  Q
    |||||||||||||  ||||| ||||| |||||| ||||| ||||||| | ||||  ||| ||||| || |  | |||||| |||||  ||||||| | ||    
T  13379009 ctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgt 13379108  T
Q  124 cggagaaacctccataggtgatagtgccatca 155  Q
    | ||| | |||||||| |||||||||||||||    
T  13379109 cagagtagcctccatatgtgatagtgccatca 13379140  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 13393477 - 13393404
Alignment:
Q  230 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 303  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| ||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacct 13393404  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 47601291 - 47601427
Alignment:
Q  22 gactatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattga 121  Q
    |||||||||||||||  || || |||||||||||| | | | | ||||| || || | ||| |||||| ||| |||||||||||||||| ||||||||||    
T  47601291 gactatacactgtgataccggcacaaagaagaggagcagtagcttcaagtggcaaaccatcgggaatgtgaaccacaaagtgctcgtctacaaccattga 47601390  T
Q  122 gtcggagaaacctccataggtgatagtgccatcacga 158  Q
    ||| ||| ||||||| || ||| | ||||||||||||    
T  47601391 gtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 47601530 - 47601575
Alignment:
Q  261 actttgtctccaactttaaacttttttactttgcttcccacctttg 306  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccacttttg 47601575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 28430659 - 28430528
Alignment:
Q  24 ctatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagt 123  Q
    |||||||| ||||  || ||||| || |||||| | ||| |||||||||||| |||||  |||||||  |||||||||   ||||| |  ||||||| ||    
T  28430659 ctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgt 28430560  T
Q  124 cggagaaacctccataggtgatagtgccatca 155  Q
    ||||| | |||||||| ||||| |||||||||    
T  28430559 cggagtagcctccatatgtgatggtgccatca 28430528  T

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