View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13829_high_4 (Length: 316)

Name: NF13829_high_4
Description: NF13829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13829_high_4
NF13829_high_4
[»] chr8 (14 HSPs)
chr8 (18-164)||(38613611-38613757)
chr8 (161-291)||(6311097-6311229)
chr8 (163-291)||(7290080-7290211)
chr8 (164-289)||(36979184-36979308)
chr8 (164-289)||(4760242-4760366)
chr8 (164-270)||(18853356-18853457)
chr8 (164-283)||(18870734-18870849)
chr8 (164-289)||(30655448-30655572)
chr8 (185-268)||(25328456-25328540)
chr8 (185-268)||(39785002-39785086)
chr8 (155-261)||(10689339-10689442)
chr8 (200-289)||(33037972-33038063)
chr8 (185-268)||(35745213-35745298)
chr8 (185-259)||(10684452-10684528)
[»] chr5 (21 HSPs)
chr5 (163-291)||(1457315-1457446)
chr5 (181-291)||(30631227-30631338)
chr5 (164-291)||(27444771-27444901)
chr5 (164-291)||(43592080-43592210)
chr5 (164-291)||(43598525-43598655)
chr5 (164-291)||(43604017-43604147)
chr5 (164-291)||(43609509-43609639)
chr5 (164-291)||(27449615-27449745)
chr5 (185-268)||(28807753-28807837)
chr5 (185-291)||(15044512-15044618)
chr5 (164-229)||(31180079-31180142)
chr5 (185-268)||(37556802-37556887)
chr5 (185-268)||(37561624-37561709)
chr5 (185-268)||(2785197-2785282)
chr5 (185-268)||(31397171-31397256)
chr5 (185-268)||(31402028-31402113)
chr5 (164-289)||(38191983-38192105)
chr5 (164-289)||(38219208-38219330)
chr5 (203-268)||(33791158-33791223)
chr5 (164-220)||(35387474-35387527)
chr5 (203-268)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (163-291)||(51520257-51520388)
chr4 (185-291)||(9224560-9224668)
chr4 (185-291)||(9229347-9229455)
chr4 (163-291)||(56146865-56146996)
chr4 (185-268)||(45347996-45348079)
chr4 (185-268)||(45357475-45357558)
chr4 (185-290)||(3813846-3813954)
chr4 (185-268)||(18855549-18855633)
chr4 (164-289)||(24741748-24741871)
chr4 (164-289)||(29760449-29760572)
chr4 (185-268)||(5732486-5732568)
[»] scaffold0135 (1 HSPs)
scaffold0135 (185-291)||(35215-35323)
[»] chr7 (15 HSPs)
chr7 (185-291)||(12396735-12396843)
chr7 (185-291)||(12406155-12406263)
chr7 (185-268)||(24024506-24024589)
chr7 (185-291)||(4866553-4866661)
chr7 (162-268)||(2057763-2057866)
chr7 (185-268)||(31109761-31109844)
chr7 (164-289)||(20357713-20357837)
chr7 (185-268)||(21812417-21812501)
chr7 (185-268)||(19992135-19992219)
chr7 (164-289)||(1533608-1533730)
chr7 (164-241)||(21645818-21645892)
chr7 (185-259)||(16879894-16879970)
chr7 (185-259)||(16884750-16884826)
chr7 (185-259)||(24261511-24261587)
chr7 (185-259)||(24266390-24266466)
[»] chr6 (14 HSPs)
chr6 (185-291)||(11856795-11856903)
chr6 (185-291)||(14737730-14737838)
chr6 (185-291)||(14742589-14742697)
chr6 (185-268)||(22010875-22010958)
chr6 (185-268)||(6438324-6438407)
chr6 (185-291)||(28184325-28184436)
chr6 (185-268)||(28155749-28155832)
chr6 (164-289)||(30125960-30126084)
chr6 (164-289)||(5674934-5675057)
chr6 (185-268)||(6005239-6005324)
chr6 (203-268)||(5343322-5343387)
chr6 (203-268)||(33330625-33330690)
chr6 (185-268)||(33336122-33336207)
chr6 (185-268)||(16838566-16838651)
[»] chr3 (14 HSPs)
chr3 (185-291)||(22173348-22173456)
chr3 (162-289)||(7167049-7167174)
chr3 (185-268)||(18656256-18656338)
chr3 (164-268)||(2671776-2671876)
chr3 (164-267)||(40372986-40373085)
chr3 (164-291)||(28504020-28504145)
chr3 (164-268)||(8739254-8739354)
chr3 (164-268)||(9091492-9091592)
chr3 (185-268)||(8512037-8512122)
chr3 (185-268)||(8516917-8517002)
chr3 (185-268)||(2677266-2677351)
chr3 (163-289)||(8477170-8477295)
chr3 (185-268)||(2673110-2673195)
chr3 (185-268)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (185-268)||(44312802-44312885)
chr2 (162-289)||(11099093-11099219)
chr2 (185-291)||(32246607-32246716)
chr2 (185-268)||(39812166-39812250)
chr2 (164-268)||(9296591-9296691)
chr2 (164-268)||(14291295-14291395)
chr2 (185-268)||(19344243-19344327)
chr2 (185-268)||(19349101-19349185)
chr2 (164-289)||(25403443-25403565)
chr2 (164-289)||(25398305-25398427)
[»] chr1 (10 HSPs)
chr1 (185-268)||(25445268-25445352)
chr1 (185-268)||(39445322-39445406)
chr1 (185-268)||(44024051-44024135)
chr1 (185-263)||(41386571-41386650)
chr1 (185-268)||(41398060-41398144)
chr1 (185-268)||(1055190-1055274)
chr1 (203-268)||(43988644-43988709)
chr1 (200-261)||(24787564-24787624)
chr1 (164-220)||(19359079-19359132)
chr1 (164-220)||(24203001-24203054)
[»] scaffold0127 (1 HSPs)
scaffold0127 (185-263)||(34132-34211)
[»] scaffold0464 (1 HSPs)
scaffold0464 (185-268)||(185-269)
[»] scaffold0355 (2 HSPs)
scaffold0355 (185-268)||(9818-9902)
scaffold0355 (185-268)||(65-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (163-261)||(433-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (185-246)||(13171-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (185-268)||(19343-19428)
scaffold0197 (185-259)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (185-268)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (185-268)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (164-220)||(24278-24331)
[»] scaffold0009 (1 HSPs)
scaffold0009 (185-259)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  18 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 117  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  118 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 164  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 161 - 291
Target Start/End: Original strand, 6311097 - 6311229
Alignment:
Q  161 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 6311196  T
Q  261 aacaaca--aaactagccctagactagtgtata 291  Q
    |||||||  |||  |||||||||||||||||||    
T  6311197 aacaacaacaaagcagccctagactagtgtata 6311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 7290211 - 7290080
Alignment:
Q  163 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa 261  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaaacaa 7290112  T
Q  262 acaaca--aaactagccctagactagtgtata 291  Q
    ||||||  |||  |||||||||||||||||||    
T  7290111 acaacaacaaagcagccctagactagtgtata 7290080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 36979184 - 36979308
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||  |    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 36979280  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||  |||||||||||||||||    
T  36979281 acaacaaaaacagccctagactagtgta 36979308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 4760366 - 4760242
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| ||||||||||||||||| |||||||  |||||| |||||||||||| || ||||||||||||| ||||| | ||||||||||||||||  |    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaa--aaacaaagatgtgtggagctagagatagtggtaatcaatgagca-aaatggtttccaagcaaca 4760270  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||  |||||||||||||||||    
T  4760269 acaacaaaaacagccctagactagtgta 4760242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 18853457 - 18853356
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| ||||||||||||||||||||| |||| |||    ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacgaaacaaa----gatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaaac 18853363  T
Q  264 aacaaaa 270  Q
    |||||||    
T  18853362 aacaaaa 18853356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 18870849 - 18870734
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| |||| |||||||| |||||   |||||||||||||||||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagataatggtaatctatgag-ttaaatggtttccaagcaaac 18870754  T
Q  264 aacaaaactagccctagact 283  Q
    |||||||   ||||||||||    
T  18870753 aacaaaaaacgccctagact 18870734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 30655448 - 30655572
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||  |    
T  30655448 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 30655543  T
Q  262 acaac-aaaactagccctagactagtgta 289  Q
    ||||| ||||  |||||||||||||||||    
T  30655544 acaacaaaaaacagccctagactagtgta 30655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 25328540 - 25328456
Alignment:
Q  185 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  25328540 tcacaacaatgaaataaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 25328456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 39785086 - 39785002
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| || |||||    
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaataacaa 39785002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 10689442 - 10689339
Alignment:
Q  155 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttc 254  Q
    ||||| || ||||||| || ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||| |||||  | |||||||||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatctatgag-tctaatggtttc 10689346  T
Q  255 caagcaa 261  Q
    |||||||    
T  10689345 caagcaa 10689339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 33038063 - 33037972
Alignment:
Q  200 aaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--aacaacaa-aactagccctagactagtgta 289  Q
    |||||| ||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||  |||||||| ||  |||||||||||||||||    
T  33038063 aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaacaacaacaataaacagccctagactagtgta 33037972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 35745213 - 35745298
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  35745213 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 35745298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 10684528 - 10684452
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc 259  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  10684528 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 10684452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 1457446 - 1457315
Alignment:
Q  163 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa 261  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 1457347  T
Q  262 acaaca--aaactagccctagactagtgtata 291  Q
    ||||||  |||  |||||||||||||||||||    
T  1457346 acaacaacaaagcagccctagactagtgtata 1457315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 30631227 - 30631338
Alignment:
Q  181 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--aacaacaaaactagccct 278  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||  ||||||||||| ||||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatggttttcaagcaacaacaacaaaac-agccct 30631325  T
Q  279 agactagtgtata 291  Q
    |||||||||||||    
T  30631326 agactagtgtata 30631338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 27444771 - 27444901
Alignment:
Q  164 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaa 262  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27444870  T
Q  263 caaca--aaactagccctagactagtgtata 291  Q
    |||||  | |  |||||||||||||||||||    
T  27444871 caacaacatagcagccctagactagtgtata 27444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 43592080 - 43592210
Alignment:
Q  164 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaa 262  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaa 43592179  T
Q  263 caaca--aaactagccctagactagtgtata 291  Q
    |||||  |||  |||||||||||||||||||    
T  43592180 caacaacaaagcagccctagactagtgtata 43592210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 43598525 - 43598655
Alignment:
Q  164 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaa 262  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43598624  T
Q  263 caaca--aaactagccctagactagtgtata 291  Q
    |||||  |||  |||||||||||||||||||    
T  43598625 caacaacaaagcagccctagactagtgtata 43598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 43604017 - 43604147
Alignment:
Q  164 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaa 262  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43604116  T
Q  263 caaca--aaactagccctagactagtgtata 291  Q
    |||||  |||  |||||||||||||||||||    
T  43604117 caacaacaaagcagccctagactagtgtata 43604147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 43609509 - 43609639
Alignment:
Q  164 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaa 262  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43609608  T
Q  263 caaca--aaactagccctagactagtgtata 291  Q
    |||||  |||  |||||||||||||||||||    
T  43609609 caacaacaaagcagccctagactagtgtata 43609639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 27449615 - 27449745
Alignment:
Q  164 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaa 262  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27449714  T
Q  263 caaca--aaactagccctagactagtgtata 291  Q
    |||||  | |  |||||||||||||||||||    
T  27449715 caacaacatagcagccctagactagtgtata 27449745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 28807837 - 28807753
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaa 28807753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 15044512 - 15044618
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||  |||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||| | |||||||  |||  ||||||||||    
T  15044512 tcacaccaatgaaata--caatgacgtgtagagcaagtgatagtggtaatcaatgagaacaaatggtctccaaaccaacaacaacaaaacagccctagac 15044609  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  15044610 tagtgtata 15044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 31180079 - 31180142
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtg 229  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaagagatagtg 31180142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 37556887 - 37556802
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37556887 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 37561709 - 37561624
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37561709 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37561624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 2785197 - 2785282
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  2785197 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 2785282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 31397256 - 31397171
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31397256 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31397171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 31402113 - 31402028
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31402113 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 38191983 - 38192105
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38192077  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||  |||||||||||||||||    
T  38192078 acaacaaaaacagccctagactagtgta 38192105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 38219208 - 38219330
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38219302  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||  |||||||||||||||||    
T  38219303 acaacaaaaacagccctagactagtgta 38219330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 33791158 - 33791223
Alignment:
Q  203 caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33791158 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33791223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 220  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 33768021 - 33768086
Alignment:
Q  203 caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||| | ||||| |||||  ||||||   ||||||| ||||||||    
T  33768021 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatgacctccaagctaacaacaa 33768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 51520257 - 51520388
Alignment:
Q  163 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa 261  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 51520356  T
Q  262 acaaca--aaactagccctagactagtgtata 291  Q
    ||||||  |||  |||||||||||||||||||    
T  51520357 acaacaacaaagcagccctagactagtgtata 51520388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 9224668 - 9224560
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9224569  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  9224568 tagtgtata 9224560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 9229455 - 9229347
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9229356  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  9229355 tagtgtata 9229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 56146996 - 56146865
Alignment:
Q  163 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa 261  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaa 56146897  T
Q  262 acaaca--aaactagccctagactagtgtata 291  Q
    ||||||  |||  |||||||||||||||||||    
T  56146896 acaacaacaaagcagccctagactagtgtata 56146865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 45348079 - 45347996
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaa 45347996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 45357558 - 45357475
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaa 45357475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 3813846 - 3813954
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctaga 281  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||  |||  || ||||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtctccaagcaaacaacaacaaaacagtcctaga 3813945  T
Q  282 ctagtgtat 290  Q
    |||||||||    
T  3813946 ctagtgtat 3813954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 18855549 - 18855633
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaa 18855633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 24741748 - 24741871
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||  |    
T  24741748 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 24741843  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||  |||||||||||||||||    
T  24741844 acaacaaaaacagccctagactagtgta 24741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 29760449 - 29760572
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| || | |  ||||||||||||||||  |    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaat-aaacaaaatggtttccaagcaaca 29760545  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||| | |||||||||||||||    
T  29760546 acaacaaaac-aaccctagactagtgta 29760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 5732486 - 5732568
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaa 5732568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 35323 - 35215
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 35224  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  35223 tagtgtata 35215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 12396735 - 12396843
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12396834  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  12396835 tagtgtata 12396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 12406155 - 12406263
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12406254  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  12406255 tagtgtata 12406263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 24024589 - 24024506
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 24024506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 4866553 - 4866661
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||  |||  || |||||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatggtctccaagcaaacaacaacaaaacagtcctagac 4866652  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  4866653 tagtgtata 4866661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 2057763 - 2057866
Alignment:
Q  162 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa 261  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaa 2057859  T
Q  262 acaacaa 268  Q
    |||||||    
T  2057860 acaacaa 2057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 31109844 - 31109761
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 31109761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 20357837 - 20357713
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc---a 260  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||||||||| |||||  |||||||| |||||||        
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagctaac 20357742  T
Q  261 aacaacaaaactagccctagactagtgta 289  Q
    ||||||||||  |||||||||||||||||    
T  20357741 aacaacaaaaacagccctagactagtgta 20357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 21812501 - 21812417
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| ||||||| |||||||| ||||||||    
T  21812501 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcttccaagctaacaacaa 21812417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 19992135 - 19992219
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||  |||||||    
T  19992135 tcacaccaatgaaataaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatggcttccaagcttacaacaa 19992219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 1533730 - 1533608
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||   |||||||||||| ||||||| |||  |||||||||||  |    
T  1533730 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaatatagtggtaatcaatgagaaaaaa--gtttccaagcaaca 1533636  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||| ||||| || ||||||||    
T  1533635 acaacaaaaccagccccagtctagtgta 1533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 21645818 - 21645892
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgag 241  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| |||||    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaagggagtggtaatctatgag 21645892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 16879894 - 16879970
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc 259  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16879894 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16879970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 16884750 - 16884826
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc 259  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16884750 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16884826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 24261587 - 24261511
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc 259  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24261587 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24261511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 24266466 - 24266390
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc 259  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24266466 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24266390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 11856795 - 11856903
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 11856894  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  11856895 tagtgtata 11856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 14737838 - 14737730
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 14737739  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  14737738 tagtgtata 14737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 14742697 - 14742589
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca---aacaacaaaactagccctaga 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||   ||||||||||| |||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcatacaacaacaaaac-agccctaga 14742599  T
Q  282 ctagtgtata 291  Q
    ||||||||||    
T  14742598 ctagtgtata 14742589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 22010958 - 22010875
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 22010875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 6438324 - 6438407
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatggcttccaagcaaacaacaa 6438407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 28184325 - 28184436
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaac--aaatggtttccaagcaaacaaca--aaactagcccta 279  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||  ||||||| |||||||||||||||  |||  |||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaaaatggtctccaagcaaacaacaacaaaacagcccta 28184424  T
Q  280 gactagtgtata 291  Q
    ||||||||||||    
T  28184425 gactagtgtata 28184436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 28155832 - 28155749
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| | ||||| ||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtcttcaagctaacaacaa 28155749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 30126084 - 30125960
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa-- 261  Q
    |||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| | ||||| ||||| |||||  |||||||| ||||||| |      
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaagaggtagtgataatctatgag-ccaaatggtctccaagctaac 30125989  T
Q  262 -acaacaaaactagccctagactagtgta 289  Q
     |||||||||  |||||||||||||||||    
T  30125988 tacaacaaaaacagccctagactagtgta 30125960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 5675057 - 5674934
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  ||||||||||||| | ||| | ||| | || |||||||  |    
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagatagtggtaatcaaagagta-aaaagtttcccaagcaaca 5674962  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||| |||||||| ||||||||    
T  5674961 acaacaaaaccagccctagtctagtgta 5674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 6005239 - 6005324
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  6005239 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 6005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 5343322 - 5343387
Alignment:
Q  203 caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  5343322 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 5343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 33330690 - 33330625
Alignment:
Q  203 caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33330690 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33330625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 33336207 - 33336122
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||| | ||||||||    
T  33336207 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaaactaacaacaa 33336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 16838566 - 16838651
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||| | ||||| |||||  |||||||  | ||||| ||||||||    
T  16838566 tcacaccaatgagaataaaccaatgatatgtggagcaagtgatagagataatctatgagtgcaaatggccttcaagctaacaacaa 16838651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 22173456 - 22173348
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctagac 282  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||  |||  ||||||||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 22173357  T
Q  283 tagtgtata 291  Q
    |||||||||    
T  22173356 tagtgtata 22173348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 7167049 - 7167174
Alignment:
Q  162 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca- 260  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||     
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgagca-aaatggtttccaagcaa 7167145  T
Q  261 -aacaacaaaactagccctagactagtgta 289  Q
     ||||||||||| |||||||||||||||||    
T  7167146 caacaacaaaac-agccctagactagtgta 7167174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 18656256 - 18656338
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaa 18656338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 2671876 - 2671776
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| |||||  |||||||| |||||||||||    
T  2671876 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagcaaac 2671781  T
Q  264 aacaa 268  Q
    |||||    
T  2671780 aacaa 2671776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 40373085 - 40372986
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||||||||||||| ||| | | |||||||||||||||||||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 40372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 28504145 - 28504020
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  | ||||| ||||| ||||||| ||||||||||||||||  |    
T  28504145 tgttgtgaatccggtcttaactcacaccaatgaat--aacaatgatgtgtggagcaaaaggtagtgataatctatgagaa-aaatggtttccaagcaaca 28504049  T
Q  262 acaacaaaactagccctagactagtgtata 291  Q
    |||||||||| |||||| ||||||||||||    
T  28504048 acaacaaaac-agcccttgactagtgtata 28504020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 8739354 - 8739254
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  8739354 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 8739259  T
Q  264 aacaa 268  Q
    |||||    
T  8739258 aacaa 8739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 9091592 - 9091492
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  9091592 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 9091497  T
Q  264 aacaa 268  Q
    |||||    
T  9091496 aacaa 9091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 8512037 - 8512122
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8512037 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8512122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 8516917 - 8517002
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8516917 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8517002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 2677351 - 2677266
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||| |||||||  ||||||| ||||||||    
T  2677351 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcctccaagctaacaacaa 2677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 8477170 - 8477295
Alignment:
Q  163 ctgttgtgattccggt-tgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca- 260  Q
    ||||||||| |||||| | ||||||||||||||||||   |||| ||||||||||||||  ||||||||||||| | ||| | ||| | || |||||||     
T  8477170 ctgttgtgaatccggtataaaactcacaccaatgaaa---acaaagatgtgtggagcaaaagatagtggtaatcaaagagta-aaaagtttcccaagcaa 8477265  T
Q  261 -aacaacaaaactagccctagactagtgta 289  Q
     ||||||||||| |||||||||||||||||    
T  8477266 caacaacaaaaccagccctagactagtgta 8477295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 2673195 - 2673110
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||||  ||||||  ||||||| ||||||||    
T  2673195 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagtaaatggcctccaagctaacaacaa 2673110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 10207755 - 10207840
Alignment:
Q  185 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  10207755 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 10207840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 44312885 - 44312802
Alignment:
Q  185 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 44312802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 11099219 - 11099093
Alignment:
Q  162 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca- 260  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||     
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaa 11099123  T
Q  261 -aacaacaaaactagccctagactagtgta 289  Q
     ||||||||||  |||||||||||||||||    
T  11099122 caacaacaaaaacagccctagactagtgta 11099093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 32246607 - 32246716
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaaca--aaactagccctaga 281  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||  |||  || ||||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtctccaagctaacaacaacaaaacagtcctaga 32246706  T
Q  282 ctagtgtata 291  Q
    ||||||||||    
T  32246707 ctagtgtata 32246716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 39812250 - 39812166
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 39812166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 9296691 - 9296591
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  | ||||||||||| ||||| | |||||||||||||||||||    
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaaggtagtggtaatctatgagca-aaatggtttccaagcaaac 9296596  T
Q  264 aacaa 268  Q
    |||||    
T  9296595 aacaa 9296591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 14291295 - 14291395
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||||||||||||| ||| | | |||||||||||||||||||    
T  14291295 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 14291390  T
Q  264 aacaa 268  Q
    |||||    
T  14291391 aacaa 14291395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 19344243 - 19344327
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19344243 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 19349101 - 19349185
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19349101 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19349185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 25403443 - 25403565
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25403537  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||  |||||||||||||||||    
T  25403538 acaacaaaaacagccctagactagtgta 25403565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 25398305 - 25398427
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagca--a 261  Q
    |||||||| || ||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25398399  T
Q  262 acaacaaaactagccctagactagtgta 289  Q
    |||||||||  |||||||||||||||||    
T  25398400 acaacaaaaacagccctagactagtgta 25398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 25445352 - 25445268
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaa 25445268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 39445322 - 39445406
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatggcttccaagcaaacaacaa 39445406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 44024135 - 44024051
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaa 44024051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 41386571 - 41386650
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 41386650  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 41398060 - 41398144
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgatagtgataatcaatgagaacatatggtctccaagcaaacaacaa 41398144  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 1055274 - 1055190
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||  ||||||||  |||||||    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgtcttccaagcttacaacaa 1055190  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 43988709 - 43988644
Alignment:
Q  203 caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  43988709 caatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 43988644  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 24787624 - 24787564
Alignment:
Q  200 aaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa 261  Q
    |||||| ||||||||||||||| ||||||||||||  ||||| | |||||||||||||||||    
T  24787624 aaacaaagatgtgtggagcaagagatagtggtaataaatgagca-aaatggtttccaagcaa 24787564  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 220  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 24203054 - 24203001
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 220  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaa 24203001  T

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Target: scaffold0127 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 34211 - 34132
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaac 263  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 34132  T

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Target: scaffold0464 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 185 - 269
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatggcttccaagcaaacaacaa 269  T

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Target: scaffold0355 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 9902 - 9818
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||| ||||| ||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtctccaaccaaacaacaa 9818  T

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Target: scaffold0355; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 143 - 65
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||| |||||||| |||||||||||||||||||||      ||||| |||||| |||||||| |||||| |||||||||    
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtga------taatcaatgagagcaaatggtctccaagtaaacaacaa 65  T

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Target: scaffold0978 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 528 - 433
Alignment:
Q  163 ctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaa 261  Q
    ||||||||| |||  || ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||    
T  528 ctgttgtgaatccatttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatggtttccaagcaa 433  T

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Target: scaffold0479 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 13171 - 13233
Alignment:
Q  185 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcgatgagaacaa 246  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||| ||||| ||||||||||    
T  13171 tcacaccaatgaaataaaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

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Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 19428 - 19343
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  19428 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 19343  T

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Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 14573 - 14497
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc 259  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  14573 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 14497  T

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Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 149219 - 149134
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  149219 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 149134  T

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Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 2514 - 2429
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagcaaacaacaa 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||  | ||||| |||||  |||||||  ||||||| ||||||||    
T  2514 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgataaagataatccatgagtgcaaatggcctccaagctaacaacaa 2429  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 24331 - 24278
Alignment:
Q  164 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 220  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 24278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 182228 - 182152
Alignment:
Q  185 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcgatgagaacaaatggtttccaagc 259  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  182228 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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