View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13829_low_1 (Length: 551)
Name: NF13829_low_1
Description: NF13829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13829_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 28857909 - 28857381
Alignment:
| Q |
8 |
agatgaacatgattaaaaaggtgctgcaagctgattcgaatgtaagaatcactgatttcctaatgagtgttcttataaataatatactgctttatcatat |
107 |
Q |
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| T |
28857909 |
agatgaacatgattaaaaaggtgctgcaagctgattcaaatgtaagaatcactaatttcctaacgagtgttcttataaataatatactactttatcatat |
28857810 |
T |
|
| Q |
108 |
ttacgaattgtgtaacttgttaattaccaatatcaattttttcctagaaatgttcatatgcattagatagatgcacaagtagcctgataccatatcatat |
207 |
Q |
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| T |
28857809 |
ttacgaattgtgtaacttgttaattaccaatattaaatttttcctagaaatgtttatatgcattagatagatgcacaagtagcatgataccatatcatat |
28857710 |
T |
|
| Q |
208 |
gatcctttacacacctaagctctagtgacgaatctttattttttctgagaattgaagagaatctttattcggtaattgaacccttgaaaagctggatcaa |
307 |
Q |
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| T |
28857709 |
gatcctttacacacctaagctctagtgacgaatctttattttttctgaaaattgaagagaatctttattcgctaattgaacccttgaaaagctggatcaa |
28857610 |
T |
|
| Q |
308 |
aattcttttgtcgttagattctctctctatctttatttatagctatagaggaaacatgcttaccttgtttattaactaactcatgtttactacgtatttt |
407 |
Q |
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| T |
28857609 |
aattcttttgtcgttagattctctctttatctgtatttatagctataaaggaaacatgcttactttttttattaactaactcatgtttactacgtatttt |
28857510 |
T |
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| Q |
408 |
gcagaacggagaaaactgtcaactttgtatttctggggaaaac------gatattgctgcttgttctaaagtacataccatgatccagtctgaaaatctg |
501 |
Q |
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| T |
28857509 |
gcagaacggagaaaactgtcaactttgtatttatggggaaaaccatattgatattgctgcttgttctaaagtacataccatgatccagtctgagaatctg |
28857410 |
T |
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| Q |
502 |
aatgaatcccaaaaagatgcagttttaag |
530 |
Q |
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| T |
28857409 |
aatgaatcccaaaaagatgcagttttaag |
28857381 |
T |
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