View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13829_low_2 (Length: 548)
Name: NF13829_low_2
Description: NF13829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13829_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 6 - 501
Target Start/End: Original strand, 45512231 - 45512735
Alignment:
| Q |
6 |
gagtgagatgaaaaccatcattcaattatttcaatagaaacagagatagaaaacatgggaagatattacaaatgtgtagtacttttggtgttgattgaaa |
105 |
Q |
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| T |
45512231 |
gagtgaaatgaaaaccatcattcaattatttcaatagaaacagagatagaaaacatgggaagatattacaaatgtgtagtacttttggtgttgattgaaa |
45512330 |
T |
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| Q |
106 |
ttgcacaaatatgcttgtgtgtaaattcaaacatcccctgtattgaaaaagagaggcaagcccttctcaatttcaaagcatccattgcacatgattcacc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512331 |
ttgcacaaatatgcttgtgtgtaaattcaaacatcccctgtattgaaaaagagaggcaagcccttctcaatttcaaagcatccattgcacatgattcacc |
45512430 |
T |
|
| Q |
206 |
aaacaagctttcatcatggaaaggcactcactgttgccaatgggaaggcattggttgtgacaatgttactagacatgttgtcaaacttgatctcatgaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512431 |
aaacaagctttcatcatggaaaggcactcactgttgccaatgggaaggcattggttgtgacaatgttactagacatgttgtcaaacttgatctcatgaat |
45512530 |
T |
|
| Q |
306 |
ccttgtcaccaaccatcttggtcgcgagaagaagaacattttggtcactact---------atttggacgattacatgccttgttcaccaatagttgctc |
396 |
Q |
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| T |
45512531 |
ccttgtcaccaaccattttggtcgcgagaagaagaacattttggtcactactatttgtacaatttggacgattacatgccttgttcaccaatagttgctc |
45512630 |
T |
|
| Q |
397 |
caaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaaataatttcagtgggagtccaattcctatgttcttgggttc |
496 |
Q |
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| T |
45512631 |
caaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctggaaataatttcagtgggagtccaattcctatgttcttgggttc |
45512730 |
T |
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| Q |
497 |
catgg |
501 |
Q |
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| T |
45512731 |
catgg |
45512735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 397 - 501
Target Start/End: Complemental strand, 22848928 - 22848824
Alignment:
| Q |
397 |
caaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaaataatttcagtgggagtccaattcctatgttcttgggttc |
496 |
Q |
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||||| ||||||||||||||||||| |||||| |||||||||||||||||||| || ||||| |||||| | ||||||||||||||||||| | ||||| |
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| T |
22848928 |
caaatctgagctcatctttgttgcacttggaatacttgacttatttggacttgactggaaatgatttcaatttgagtccaattcctatgttcgtaggttc |
22848829 |
T |
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| Q |
497 |
catgg |
501 |
Q |
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||||| |
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| T |
22848828 |
catgg |
22848824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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