View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1382_high_12 (Length: 252)
Name: NF1382_high_12
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 24828116 - 24828352
Alignment:
| Q |
1 |
tgaattgcataatctagagattttggagttgcaagaaaattatttggatggtgaaattccaccttttgatcaaccatcattgataagtttcaatgtgtca |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24828116 |
tgaattgtataatctagatattttggagttgcaagaaaattatttggatggtgaaattccaccttttgatcaaccatcattgataagtttcaatgtgtca |
24828215 |
T |
|
| Q |
101 |
tataatcatttggtagggaaaattcctgaaacttctttgcttcaaaggtttccaaagagttcttttgatgataattctgatctttgtggaaaaccattgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24828216 |
tataatcatttggtagggaaaattcctgaaacttctttgcttcaaaggtttccaaagagttcttttgatgataattctgatctttgtggaaaaccattgg |
24828315 |
T |
|
| Q |
201 |
ataagtcatgttctgctgaatctcctgcaccacttcc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24828316 |
ataagtcatgttctgctgaatctcctgcaccacttcc |
24828352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University