View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382_high_13 (Length: 251)
Name: NF1382_high_13
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 25884056 - 25883855
Alignment:
| Q |
22 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884056 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
25883957 |
T |
|
| Q |
122 |
catttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcatttgatactcgaaaactctgaaacaatccgttacaaacttgtttcagagtta |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25883956 |
catttccgtcaaaaacaacaacattcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagtta |
25883857 |
T |
|
| Q |
222 |
gg |
223 |
Q |
| |
|
|| |
|
|
| T |
25883856 |
gg |
25883855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 25905390 - 25905165
Alignment:
| Q |
22 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25905390 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
25905291 |
T |
|
| Q |
122 |
catttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcatttgatactcgaaaactctgaaacaatccgttacaaacttgtttcagagtta |
221 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25905290 |
catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagtta |
25905191 |
T |
|
| Q |
222 |
ggcnnnnnnncatgtaaaaccatgtc |
247 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
25905190 |
ggcgaagaaacatgtaaaaccatgtc |
25905165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 25924231 - 25924032
Alignment:
| Q |
24 |
tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaacttca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
25924231 |
tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttta |
25924132 |
T |
|
| Q |
124 |
tttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcatttgatactcgaaaactctgaaacaatccgttacaaacttgtttcagagttagg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
25924131 |
tttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttagg |
25924032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 25961036 - 25961237
Alignment:
| Q |
22 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25961036 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
25961135 |
T |
|
| Q |
122 |
catttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcatttgatactcgaaaactctgaaacaatccgttacaaacttgtttcagagtta |
221 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||||| |||||| |
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|
| T |
25961136 |
catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagtta |
25961235 |
T |
|
| Q |
222 |
gg |
223 |
Q |
| |
|
|| |
|
|
| T |
25961236 |
gg |
25961237 |
T |
|
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