View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382_high_2 (Length: 416)
Name: NF1382_high_2
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 407
Target Start/End: Complemental strand, 11395481 - 11395103
Alignment:
| Q |
30 |
aggaggagggaagacggagatggaggagagatcggaggctttgttgatcttcattttcatatcggatctgaagaaaacggttagcttgcnnnnnnnnnnn |
129 |
Q |
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| T |
11395481 |
aggaggagggaagacggagatggaggagagatcggaggctttgttgatcttcattttcatatcggatctgaagaaaacggttagctttcagagaaagaag |
11395382 |
T |
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| Q |
130 |
nnnnnnnnngagcgagttgaaaacaagcgggaatggaacggggatttaaacggagggtgtttgttatgggtttaaaggttttaaaccggatatatatggg |
229 |
Q |
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| T |
11395381 |
aagaagaaggagcgagttgaaaacaagcgggaatggaacggggatttaaacggagggtgtttgttatgggtttaaaggttttaaaccggatatatatggg |
11395282 |
T |
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| Q |
230 |
tcggatctcggatccaccatttctttgacagaaaaaggtcctgcaatgcaatg-ccagtgtaaagtagttttacacttacgttcaatttgacagnnnnnn |
328 |
Q |
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| T |
11395281 |
tcggatctcggatccaccatttctttgacagaaaaaggtcctgcaatgcaatgtccggtgtaaagtagttttacacttacgttcaatttgacagtttttt |
11395182 |
T |
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| Q |
329 |
naaaaactgttttaactatatgatgagtttagttactatacattgtcattgtacaacaattattttacactagtataat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
11395181 |
taaaaactgttttaactatatgatgagtttagttactatactttgtcattgtacaacaattattttacacgagtataat |
11395103 |
T |
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