View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1382_high_3 (Length: 399)
Name: NF1382_high_3
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 48 - 332
Target Start/End: Original strand, 9355156 - 9355440
Alignment:
| Q |
48 |
tcttggaaatttttaagggaggacatattaatggtagaaggtcagtaaaagcgggatgacaattttatttccaggaaaatctcaacagtatgctataatg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9355156 |
tcttggaaatttttaagggaggacatattaatggtagaaggtcagtaaaaacgggatgacaattttatttctaggaaaatctcaacagtatgctataatg |
9355255 |
T |
|
| Q |
148 |
gcagagcagccacttggcgctacatctacagaacttccacgcgccacgttttccaactacagcagtctggtgctattgctgccactataatggaagatta |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9355256 |
gcagagcagccacttgccgctacatctacagaacttccacgcgccacgttttccaactacagtaatctggtgctattgctgccactataatggaagatta |
9355355 |
T |
|
| Q |
248 |
tggctgttgcatattgtcacaaagcccatctttaccctgttcctccccacaaatgactatgatggcttctgcttcaattaaaatg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9355356 |
tggctgttgcatattgtcacaaagcccatctttaccccgttcctccccacaaatgactatgatggcttttgcttcaattaaaatg |
9355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 52 - 332
Target Start/End: Original strand, 9345765 - 9346030
Alignment:
| Q |
52 |
ggaaatttttaagggaggacatattaatggtagaaggtcagtaaaagcgggatgacaattttatttccaggaaaatctcaacagtatgctataatggcag |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9345765 |
ggaaatttttaagggaggacatattaatggtagaaggt---------------gacaattttatttccaggaaaatctcaacagtatgctataatggcag |
9345849 |
T |
|
| Q |
152 |
agcagccacttggcgctacatctacagaacttccacgcgccacgttttccaactacagcagtctggtgctattgctgccactataatggaagattatggc |
251 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9345850 |
agcagccacttgccgctacatctacagaacttccacgcgccacgttttccaactacagtaatctggtgctattgctgccactataatggaagattatggc |
9345949 |
T |
|
| Q |
252 |
tgttgcatattgtcacaaagcccatctttaccctgttcctccccacaaatgactatgatggcttctgcttcaattaaaatg |
332 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9345950 |
tgttgagtattgtcacaaagcccatctttaccccgttcctccccacaaatgactatgatggcttttgcttcaattaaaatg |
9346030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University