View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382_high_5 (Length: 323)
Name: NF1382_high_5
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 36645837 - 36645937
Alignment:
| Q |
8 |
atccattaagttccacattggctagaatatggaacaagtgtgtgtttataaaggtctggcatgctggtatgttctccgagctgggtaatactagcttgtg |
107 |
Q |
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| T |
36645837 |
atccattaagtcccacattggctagaatatggaacaagtatgtgtttataaaggtctggcatgctagtatgtttgccgagctgcgtaacaccagcttgtg |
36645936 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
36645937 |
a |
36645937 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 34541678 - 34541721
Alignment:
| Q |
280 |
aaacctcgactataataagcaaaatgaaaagaaaattagttgaa |
323 |
Q |
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| T |
34541678 |
aaacctcgactataataagcaaaatgaaacgaaaattagttgaa |
34541721 |
T |
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