View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382_low_1 (Length: 728)
Name: NF1382_low_1
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 281 - 728
Target Start/End: Complemental strand, 2794149 - 2793702
Alignment:
| Q |
281 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaatcagttataacctttccaatcgaaacaag |
380 |
Q |
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| T |
2794149 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaatcagttataagctttccaatcgaaacaag |
2794050 |
T |
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| Q |
381 |
gtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaatatagtcgtttttccgaatggaaagaatctactta |
480 |
Q |
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| T |
2794049 |
gtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaacagagtcgtttttcagaatggaaagaatctcatca |
2793950 |
T |
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| Q |
481 |
gcagcacctctgataatcccaaggggctgaccaccataccactgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggct |
580 |
Q |
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| T |
2793949 |
gcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggct |
2793850 |
T |
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| Q |
581 |
cgtaaacaccgtcatcaatggcattgagtacactctggctttcgctctgaagacgacgctgtttgttccgacgataacctccggagtcagattcatcgat |
680 |
Q |
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| T |
2793849 |
cgtaaacaccgttatcaacggcattgagtacactctggctttcgctctgaagacgacgctgtttgttcctacgataacctccggagtcaaattcatcgat |
2793750 |
T |
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| Q |
681 |
taggtttctcttaggaggacggttacgaaaagcacgatcgccaaaaac |
728 |
Q |
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| T |
2793749 |
taggtttctcttaggaggacggttacgaaaagcacgatcgccaaaaac |
2793702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 2794427 - 2794217
Alignment:
| Q |
3 |
gtcatcagcctcacccaaaaccttcaacacctcttcaacaagccttcgacaattttctggatcaatctctggtccaaaagccggcgagattttcctctga |
102 |
Q |
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| T |
2794427 |
gtcatcagcctcacccaaaaccttcaacacctcttcagcaagccttcgacaattttccggatcaatctctggtccaaaagccggcgagattttcctctga |
2794328 |
T |
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| Q |
103 |
agccaatacgcatcaatatcatgcacattcaattcttcatcatctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcac |
202 |
Q |
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| T |
2794327 |
agccaatacgcatcaatatcatgcacattcaattcttcatcatctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcac |
2794228 |
T |
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| Q |
203 |
ctatttcaaaa |
213 |
Q |
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| T |
2794227 |
ctatttcaaaa |
2794217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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