View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382_low_16 (Length: 291)
Name: NF1382_low_16
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 13297889 - 13297697
Alignment:
| Q |
30 |
attgagagttctcagcttgcttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgatttt |
129 |
Q |
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| T |
13297889 |
attgagagttctcagcttgcttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtagatgtttcgcaatttt |
13297790 |
T |
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| Q |
130 |
cgaccacctgcattggtgaatgattaatttgcaaaagaatgttggagatatataattgattactagtcttaagtgtctggttttggtgtatgt |
222 |
Q |
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| T |
13297789 |
cgaccacctgcattggtgaatgattaatttgcaaaagaatgttggagatatataattgattactagttttaattgtctggtttggatgtatgt |
13297697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 13297684 - 13297652
Alignment:
| Q |
244 |
tcgtattaaccatatggtttttaagcggtaaat |
276 |
Q |
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| T |
13297684 |
tcgtattaaccatctggtttttaagcggtaaat |
13297652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 38720115 - 38720040
Alignment:
| Q |
68 |
cttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgattttcgaccacctgcatt |
143 |
Q |
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| T |
38720115 |
cttgttctccaatagttctttatttcattgtcggttcttcccggtaattgttccgctattttagaccaccttcatt |
38720040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 49848555 - 49848626
Alignment:
| Q |
67 |
ccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgattttcgaccacct |
138 |
Q |
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| T |
49848555 |
ccttgttctccaatagttctttatctcattatctgttcttcctggtaaatgctgagcaatttttgaccacct |
49848626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 32447494 - 32447534
Alignment:
| Q |
71 |
gtcctccagtagttctttatctcattatcggttcttcccgg |
111 |
Q |
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| T |
32447494 |
gtcctccaatagttctttatctcattgtctgttcttcccgg |
32447534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 972891 - 972786
Alignment:
| Q |
45 |
cttgcttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgattttcgaccacctgcattg |
144 |
Q |
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| T |
972891 |
cttgcttaatgtgcttttgtatcctagtcctccaaaaattcttaatctcattgtcagttcttcctggaagatgctttgcaattttggaccacctgcaatg |
972792 |
T |
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| Q |
145 |
gtgaat |
150 |
Q |
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|||||| |
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| T |
972791 |
gtgaat |
972786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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