View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382_low_2 (Length: 680)
Name: NF1382_low_2
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 651
Target Start/End: Complemental strand, 40033791 - 40033168
Alignment:
| Q |
16 |
atatctaactatcctaaatgataagaacacatcaaatagaaatgaaattgtaccctaaattgtgcgaaagaaatttaccttgaatgaagttactcagaaa |
115 |
Q |
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| T |
40033791 |
atatctaactatcctaaatgataagaacacatcaaatagaaacgaaattgtaccctaaattgtgagaaagaaatttaccttgaatgaagttactcagaaa |
40033692 |
T |
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| Q |
116 |
ccctagaaccggtagagaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacggaattgccc |
215 |
Q |
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| T |
40033691 |
ccctaga---------gaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacggaattgccc |
40033601 |
T |
|
| Q |
216 |
tttgtttttgcatgcaccgccactctctgagccccctataatatactgccatgatttctggcttcaacacaaagctggttgagaaaacttatttttggca |
315 |
Q |
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| T |
40033600 |
tttgtttttgcatgcaccgccactctctgagccccctataatatactgccatgatttctggcttcaacacaaagctggttgagaaaacttatttttggca |
40033501 |
T |
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| Q |
316 |
ataactgatactatcataacaatgtatgtctttgacattaatatcatgtgtataactttatgtgaaatttgaactcaatgtgtaaatttgtgtaatggat |
415 |
Q |
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| T |
40033500 |
ataattgatactatcataacaatgtatgtctttgacattaatatcatgtgtataactttatgtgaaatttgaactcaatgtgtaaatttgtgtaatggat |
40033401 |
T |
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| Q |
416 |
aaactttctcatagatgatgatagggaagatagtttcttttcaaagtcaatggcttctagttttaaacgaaggaaaagggtgaaaaacttcgatgttaaa |
515 |
Q |
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| T |
40033400 |
aaactttctcatagatgatgatagggaagatagtttcttttcaaagtcaatggcttctagttttaaacgaaggaaaagggtgaaaaacttcaatgttaaa |
40033301 |
T |
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| Q |
516 |
ggaattcaccagatttccctcaagtttagaccaagcagtattcctcaaacaagttctcttcagccgaataatgaaggc-tatatatctaaatgcgagtta |
614 |
Q |
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| T |
40033300 |
ggaattcaccagatttccctcaagtttagaccacg-agtattcctcaaacaagttcttctcagccg---aatgaaggcttatatatctaaatgcgagtta |
40033205 |
T |
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| Q |
615 |
ggtaaatcttgttcatgtctattaagttccaaataag |
651 |
Q |
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| T |
40033204 |
ggtaaatcttgttcatgtctattaaggtccaaataag |
40033168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 429 - 540
Target Start/End: Complemental strand, 40038902 - 40038791
Alignment:
| Q |
429 |
gatgatgatagggaagatagtttcttttcaaagtcaatggcttctagttttaaacgaaggaaaagggtgaaaaacttcgatgttaaaggaattcaccaga |
528 |
Q |
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| T |
40038902 |
gatgatgatagggaagatagtttcttttcaaagtcaatgactccaagttttaaacgaagaaaaggagtgaaaagcttcaatgttaaaggaattcaccaga |
40038803 |
T |
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| Q |
529 |
tttccctcaagt |
540 |
Q |
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| T |
40038802 |
tttccctcaagt |
40038791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 40039170 - 40039124
Alignment:
| Q |
266 |
atgatttctggcttcaacacaaagctggttgagaaaacttatttttg |
312 |
Q |
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| T |
40039170 |
atgatatctggcttcaacaccaagctggttgagaaaacttatttttg |
40039124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 40038980 - 40038936
Alignment:
| Q |
374 |
tatgtgaaatttgaactcaatgtgtaaatttgtgtaatggataaa |
418 |
Q |
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| T |
40038980 |
tatgtgaaatttgaactcaacgtataaatttgtattatggataaa |
40038936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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