View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1382_low_21 (Length: 253)

Name: NF1382_low_21
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1382_low_21
NF1382_low_21
[»] chr4 (10 HSPs)
chr4 (29-169)||(4220966-4221108)
chr4 (53-253)||(3821752-3821953)
chr4 (53-172)||(3812179-3812300)
chr4 (29-142)||(3952830-3952943)
chr4 (53-142)||(4003488-4003577)
chr4 (29-142)||(3988353-3988466)
chr4 (56-142)||(3926777-3926866)
chr4 (53-124)||(4026724-4026795)
chr4 (56-142)||(3915783-3915872)
chr4 (56-129)||(4011970-4012043)
[»] chr5 (2 HSPs)
chr5 (53-142)||(13399329-13399418)
chr5 (196-229)||(23232715-23232748)
[»] chr3 (1 HSPs)
chr3 (195-238)||(54548094-54548137)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 4220966 - 4221108
Alignment:
Q  29 agaaagccgtcgcggacatcatttcccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4220966 agaaagccgtcgcggacatcatttcccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttca 4221065  T
Q  129 acttgttaacaaa--agaggtattggattcttcataaatattc 169  Q
    |||||||||||||  |||||||||||| |||||||||||||||    
T  4221066 acttgttaacaaaacagaggtattggactcttcataaatattc 4221108  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 3821752 - 3821953
Alignment:
Q  53 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaacttgttaacaaa--agaggtatt 150  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||| |||| |  |||||||| ||||||||||||| ||||||||  |||||||||    
T  3821752 cccctaaagcttacaaaaacatcatactttaattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaaaacagaggtatt 3821851  T
Q  151 ggattcttcataaatattcaggtgaaatctcaccnnnnnnnnnnctaaatatatgtgaaaataatttatttaaacaaaatgaaggaaattgattttatag 250  Q
    |||||||| |||||||||||||||||| |||| |          |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  3821852 ggattctttataaatattcaggtgaaacctca-cgaagaaaaaactaaatatatgtgaaaataatttatttaaataaaatgaagggaattgattttatag 3821950  T
Q  251 ata 253  Q
    |||    
T  3821951 ata 3821953  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 3812179 - 3812300
Alignment:
Q  53 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaacttgttaacaaa--agaggtatt 150  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |  |||||||| ||||||||||||| ||||||||  |||||||||    
T  3812179 cccctaaagcttacaaaaacatcatactttgattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaaaacagaggtatt 3812278  T
Q  151 ggattcttcataaatattcagg 172  Q
     |||||||||||||||||||||    
T  3812279 agattcttcataaatattcagg 3812300  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 3952943 - 3952830
Alignment:
Q  29 agaaagccgtcgcggacatcatttcccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttca 128  Q
    |||||||||| |||||  || | ||||||||||||||||||||||||| |||||||||  |||| ||||||||||||||  ||||||||| |||||||||    
T  3952943 agaaagccgtggcggatgtcctctcccctaaagcttacaaaaacatcatactttgattcgggagaattgtttgacattgtcttttctgctacacccttca 3952844  T
Q  129 acttgttaacaaaa 142  Q
     ||| |||||||||    
T  3952843 ccttattaacaaaa 3952830  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 4003488 - 4003577
Alignment:
Q  53 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaacttgttaacaaaa 142  Q
    |||||||||||||||||||||||| ||||| |||  |||| || |||||||||||| ||||||||| |||||||||| || | |||||||    
T  4003488 cccctaaagcttacaaaaacatcatactttaattggggagcatcgtttgacattgccttttctgctacacccttcaatttatcaacaaaa 4003577  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 3988353 - 3988466
Alignment:
Q  29 agaaagccgtcgcggacatcatttcccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttca 128  Q
    ||||||||||| ||||  || || ||||||||||| |||||||||||| | |||||||  ||||  ||| |||||||||  |||||| || |||||||||    
T  3988353 agaaagccgtctcggatgtccttgcccctaaagctcacaaaaacatcatattttgattggggagcgttggttgacattgacttttctcctacacccttca 3988452  T
Q  129 acttgttaacaaaa 142  Q
    |||| |||||||||    
T  3988453 acttattaacaaaa 3988466  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 3926866 - 3926777
Alignment:
Q  56 ctaaagcttacaaaaacatcaaactttgatt---taggagtattgtttgacattgctttttctgctgcacccttcaacttgttaacaaaa 142  Q
    ||||||||||||||||||||| ||||||| |    ||||||||||||||||||||  ||||| ||  ||||||||||||| |||||||||    
T  3926866 ctaaagcttacaaaaacatcatactttgaatgaggaggagtattgtttgacattgtcttttccgcaacacccttcaacttattaacaaaa 3926777  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 4026724 - 4026795
Alignment:
Q  53 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcaccc 124  Q
    ||||||||| |||| ||||||||| |||||| || ||||| |||||| |||||||| |||||||||||||||    
T  4026724 cccctaaagtttacgaaaacatcatactttggttgaggagcattgttagacattgccttttctgctgcaccc 4026795  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 3915872 - 3915783
Alignment:
Q  56 ctaaagcttacaaaaacatcaaactttgatt---taggagtattgtttgacattgctttttctgctgcacccttcaacttgttaacaaaa 142  Q
    ||||||||||||||||||||| ||||||| |    ||||||||||||||||||||  ||||| ||  |||||||||| || |||||||||    
T  3915872 ctaaagcttacaaaaacatcatactttgaatgaggaggagtattgtttgacattgtcttttccgcaacacccttcaatttattaacaaaa 3915783  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 4011970 - 4012043
Alignment:
Q  56 ctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaa 129  Q
    |||||||||||||||||||||  ||||||||  |||| | ||||||||  ||| ||||||||| || |||||||    
T  4011970 ctaaagcttacaaaaacatcatcctttgattggggagaaatgtttgacggtgccttttctgctacagccttcaa 4012043  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 13399329 - 13399418
Alignment:
Q  53 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaacttgttaacaaaa 142  Q
    |||||||||||||||||||||||  |  ||||||  |||| |||  |||||| ||||||||| |||  |||||||||||| |||||||||    
T  13399329 cccctaaagcttacaaaaacatcgtatattgattggggagcatttcttgacactgctttttcagctatacccttcaacttattaacaaaa 13399418  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 23232748 - 23232715
Alignment:
Q  196 taaatatatgtgaaaataatttatttaaacaaaa 229  Q
    ||||||||||||||||||||||||||||| ||||    
T  23232748 taaatatatgtgaaaataatttatttaaataaaa 23232715  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 54548137 - 54548094
Alignment:
Q  195 ctaaatatatgtgaaaataatttatttaaacaaaatgaaggaaa 238  Q
    ||||||||| |||||||||| |||||||||||||||||| ||||    
T  54548137 ctaaatataagtgaaaataacttatttaaacaaaatgaatgaaa 54548094  T

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