View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1382_low_4 (Length: 537)
Name: NF1382_low_4
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 30 - 529
Target Start/End: Original strand, 45544583 - 45545082
Alignment:
| Q |
30 |
cctattggaggtgctgtcggacgcttaatgtaggcatctctcagcctggattcaaatcttgattcgtcaggttttgggagtctagcccttccaataaacc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45544583 |
cctattggaggtgctgtcggacgcttaatgtaggcatctctcagcctggattcaaatcttgattcgtcaggttttgggagtctagcccttccaataaacc |
45544682 |
T |
|
| Q |
130 |
caatccccaattaagtgctcattttgtcaaataccaaacattaaatctggcaaaacagcacactactaatatattgatacagaatgcagagtttatagca |
229 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45544683 |
caatccccaattaagtgctcattttttcaaataccaaacattaaatctggcaaaacagcacactactaatatattgatacagaatgcagagtttatagca |
45544782 |
T |
|
| Q |
230 |
aaaccaaaaaatagagttctgaaactttgttgaatcaatctacttaccagcaatacttggatcagtgtcattggtttgataattgggatggatataagtc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45544783 |
aaaccaaaaaatagagttctgaaactttgttgaatcaatctacttaccagcaccacttggatcagtgtctttggtttgataattgggatggatataagtc |
45544882 |
T |
|
| Q |
330 |
tcagttctacttccttgatcttgagaatcttcctccaaatttttctggtctctattgatatctgtggacaatgtttcctgaggatattcattctgagttt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45544883 |
tcagttctacttccttgatcttgagaatcttcctccaaaattttctggtctctattgatatctgtggacaatgtttcctgaggatattcattctgagttt |
45544982 |
T |
|
| Q |
430 |
ttgttgcatcagtgaagtgtggcacaaactgatcatggcttttaacatcagaagggtattcagtgtcagcaacatatgactggatttttggttctgtggt |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45544983 |
ttgttgcatcagtgaagtgtggcacaaactgatcatggcttttaacatcagaagggtattcagtgtcagcaacatatgactggatttttggttctgtggt |
45545082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 284 - 529
Target Start/End: Original strand, 45549631 - 45549873
Alignment:
| Q |
284 |
acttggatcagtgtcattggtttgataattgggatggatataagtctcagttctacttccttgatcttgagaatcttcctccaaatttttctggtctcta |
383 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||| | |||| | ||||||||||||||||||||||||||||| |||||||||| ||| | || |||| |
|
|
| T |
45549631 |
acttgaatcagcgtctttggtttgataattgggaagagtatatgcctcagttctacttccttgatcttgagaatattcctccaaaatttcccagtttcta |
45549730 |
T |
|
| Q |
384 |
ttgatatctgtggacaatgtttcctgaggatattcattctgagtttttgttgcatcagtgaagtgtggcacaaactgatcatggcttttaacatcagaag |
483 |
Q |
| |
|
|| |||| |||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
45549731 |
tt---atctttggatactgtttcactaggatattcattctgagtttttgttgcatcagagaagtgtggcacaaactgatcatggcttccaacagcaggag |
45549827 |
T |
|
| Q |
484 |
ggtattcagtgtcagcaacatatgactggatttttggttctgtggt |
529 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| ||| |||||||||| |
|
|
| T |
45549828 |
ggtattcagtgtcagtaacagatggctggatatttcgttctgtggt |
45549873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 382 - 529
Target Start/End: Original strand, 45544032 - 45544179
Alignment:
| Q |
382 |
tattgatatctgtggacaatgtttcctgaggatattcattctgagtttttgttgcatcagtgaagtgtggcacaaactgatcatggcttttaacatcaga |
481 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| || |||||||||| ||||||||||||||||| | || |||| |
|
|
| T |
45544032 |
tattgatatctgtggatgctgtttcccgaggatattcattctgagtttctgttgcattagcgaagtgtggcgcaaactgatcatggcttccagcagcaga |
45544131 |
T |
|
| Q |
482 |
agggtattcagtgtcagcaacatatgactggatttttggttctgtggt |
529 |
Q |
| |
|
|||||||||| |||||| |||| ||| ||||||||||| ||| ||||| |
|
|
| T |
45544132 |
agggtattcaatgtcagtaacaaatggctggatttttgtttcagtggt |
45544179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 464
Target Start/End: Original strand, 45548795 - 45548884
Alignment:
| Q |
375 |
tggtctctattgatatctgtggacaatgtttcctgaggatattcattctgagtttttgttgcatcagtgaagtgtggcacaaactgatca |
464 |
Q |
| |
|
|||| ||||||||| | | |||| | |||| ||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
45548795 |
tggtttctattgatgtttttggatactgttacctgaggatattcattcggagtttctgttgcatcagagaggtgtggcacaaactgatca |
45548884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 45550862 - 45550945
Alignment:
| Q |
284 |
acttggatcagtgtcattggtttgataattgggatggatataagtctcagttctacttccttgatcttgagaatcttcctccaa |
367 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| | |||| ||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
45550862 |
acttggatcagtttctttggtttgataattgggaagagtatattcctcggttctacttccttgttcttgagaatcttcctccaa |
45550945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 441
Target Start/End: Original strand, 45543359 - 45543425
Alignment:
| Q |
375 |
tggtctctattgatatctgtggacaatgtttcctgaggatattcattctgagtttttgttgcatcag |
441 |
Q |
| |
|
|||| |||||||||||||||||| | |||||| |||||||||||| ||||||||| || |||||||| |
|
|
| T |
45543359 |
tggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgctgcatcag |
45543425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 441
Target Start/End: Original strand, 45543896 - 45543962
Alignment:
| Q |
375 |
tggtctctattgatatctgtggacaatgtttcctgaggatattcattctgagtttttgttgcatcag |
441 |
Q |
| |
|
|||| |||||||||||||| ||| |||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
45543896 |
tggtttctattgatatctgcggatgttgtttcttgaggatattcattctgaatttctgttgcatcag |
45543962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 45545637 - 45545718
Alignment:
| Q |
286 |
ttggatcagtgtcattggtttgataattgggatggatataagtctcagttctacttccttgatcttgagaatcttcctccaa |
367 |
Q |
| |
|
|||||| |||||| |||||||| ||| ||||| |||| | ||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
45545637 |
ttggattagtgtctttggtttggtaagtgggaaaagtatatgcctcagctctacttccttgttcttgagaatcttcctccaa |
45545718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 45550206 - 45550253
Alignment:
| Q |
482 |
agggtattcagtgtcagcaacatatgactggatttttggttctgtggt |
529 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
45550206 |
agggtattcaatgtcgacaacagatgactggatttttggttctgtggt |
45550253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University