View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1382_low_5 (Length: 460)
Name: NF1382_low_5
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_low_5 |
 | |
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| [»] chr2 (4 HSPs) |
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| [»] chr4 (6 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 87 - 460
Target Start/End: Original strand, 828504 - 828877
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
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|
| T |
828504 |
atcaagtggaacggaatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
828603 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828604 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
828703 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
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|
| T |
828704 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
828803 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
828804 |
gttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtac |
828877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 231 - 460
Target Start/End: Complemental strand, 13842061 - 13841832
Alignment:
| Q |
231 |
atcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaaatttatatgctccaaccggaaggatttaaggaacaaggaaaaga |
330 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||| ||| ||| || ||| |||||||||| |
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|
| T |
13842061 |
atcttgaacaactagatgtaaagactgctttttttcatggtgaaattgaagaagacatttatatgctccaaccagaaagatccaaagaagaaggaaaaga |
13841962 |
T |
|
| Q |
331 |
aaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagatgctggtacaagagatttgattctttcatcattagcctcgattac |
430 |
Q |
| |
|
|||||| | | | |||||||| |||| | |||| || |||||||| | ||| ||| || ||||||| |||| ||||||| || |||||||| ||||| |
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| T |
13841961 |
aaacttagtttgtaggttgactaaatctttgtacggctgaaagcaggtgtccatatgttgctacaagatatttaattctttgataattagccttcattac |
13841862 |
T |
|
| Q |
431 |
aaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
|| ||||| |||| || |||||||||||| |
|
|
| T |
13841861 |
aacagactgagtttaggccattgtacgtac |
13841832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 13842163 - 13842067
Alignment:
| Q |
72 |
aatgagatggacatcatcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttc |
168 |
Q |
| |
|
|||| |||||| || |||||||| ||| |||||||||||| || |||| ||||||||| |||||||| |||||| || ||||||||||||||||| |
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|
| T |
13842163 |
aatgtgatggaaatgatcaagtgagacgatatcgtgcaagattgattgtcaaaggatatactcagaaaagaggtattgatttcaatgagatattttc |
13842067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 17455389 - 17455350
Alignment:
| Q |
247 |
tgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17455389 |
tgtaaagactgcttttgttcatggagaacttgaagaagaa |
17455350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 87 - 460
Target Start/End: Complemental strand, 48699113 - 48698740
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
48699113 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
48699014 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699013 |
tactatcagagtagtgttggcgatgtgtgctgcgttggatttacatcttgaacagctagatgtaaagactgcttttcttcatggagaacttgaagaagaa |
48698914 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
48698913 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
48698814 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
48698813 |
gttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtac |
48698740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 87 - 460
Target Start/End: Complemental strand, 30947475 - 30947102
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30947475 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
30947376 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947375 |
tactattagagtagtgttggcaatgtgtgctgcattggatttacatcttgaacagctagatgtaaagactgcttttcttcatggagaacttgaagaagaa |
30947276 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
30947275 |
atttatatgcttcaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
30947176 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
30947175 |
gttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtac |
30947102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 87 - 460
Target Start/End: Original strand, 42268928 - 42269301
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
42268928 |
atcaagtggaacggtatcgtgcaaggctggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
42269027 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269028 |
tactatcagagtagtgttggcgatgtgtgctgcgttggatttacatcttgaacagctagatgtaaagactgcttttcttcatggagaacttgaagaagaa |
42269127 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
42269128 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
42269227 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
42269228 |
gttggtacaagagatttgattctttcataattagcctcgattacagcagacttagttcagaccattgtacgtac |
42269301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 87 - 456
Target Start/End: Original strand, 2001902 - 2002277
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||| ||||| |||||||||||| |||| || ||||| ||||||||||||||| |||| || |||||||| ||||| ||||| ||||||||||| || |
|
|
| T |
2001902 |
atcaagtagaacgatatcgtgcaagattggtggttaaagggtatgctcagaaagaatgtattgatttcaatgaaatattctccccagttgttagactcac |
2002001 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||| |||||| |||| ||||| ||||||||||| || |||||| |||||||||| | |||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
2002002 |
taccatcagaatagttttggctatgtgtgctgcgtttgatttatatcttgaacaattagatgtaaaaactgcttttcttcacggagagcttgaagaagaa |
2002101 |
T |
|
| Q |
287 |
------atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgc |
380 |
Q |
| |
|
|| |||||||||||||| ||||| ||| | ||||||||||| |||||||||| | ||||||||||||| | | |||| | ||||| |||||| |
|
|
| T |
2002102 |
atatatatatatatgctccaaccagaaggttttgaagaacaaggaaaggaaaacttggtttgcaggttgaccaattctatgtacagtctaaaataggcgc |
2002201 |
T |
|
| Q |
381 |
ccagatgctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtac |
456 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||| ||||||| | ||||| ||||||| |||||| |||||||| |
|
|
| T |
2002202 |
ctagatgttggtacaagagatttgattctttcatagttagccttggatacaacagacttaattcagaccattgtac |
2002277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 28608804 - 28608721
Alignment:
| Q |
233 |
cttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaaatttatatgctccaaccggaaggatttaag |
316 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| | || ||||| || || ||| | ||||| |||||||||||| |
|
|
| T |
28608804 |
cttgaacaaatggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttaag |
28608721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 14177071 - 14177111
Alignment:
| Q |
233 |
cttgaacagctggatgtaaagactgcttttcttcatggaga |
273 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
14177071 |
cttgaacaaatggatgtaaagactgcatttcttcatggaga |
14177111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 87 - 460
Target Start/End: Complemental strand, 5820567 - 5820194
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
5820567 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
5820468 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820467 |
tactatcagagtagtgttggcgatgtgtgctgcgttggatttacatcttgaacagctagatgtaaagactgcttttcttcatggagaacttgaagaagaa |
5820368 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
5820367 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
5820268 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
5820267 |
gttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtac |
5820194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 87 - 456
Target Start/End: Original strand, 42587973 - 42588342
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| || ||||| |||||||| ||||||||||| || |||||| | ||||| ||||| ||||||||||| || |
|
|
| T |
42587973 |
atcaagtagaacgatatcgtgcaagactggtggttaaagggtatgctcaaaaagaaggtatagatttcaataaaatattctccccagttgttagactcac |
42588072 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||||||||| |||| || || ||||||| ||| || ||||||||||||||||| | |||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
42588073 |
aactatcagaatagttttagctatgtgtgttgcgtttgatttacatcttgaacaattagatgtaaaaacttcttttcttcatggagagcttgaagaagaa |
42588172 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|| |||||||||||||| ||||| ||| | ||||||||||| |||||||||| | ||||||||||||||| ||| || || ||||| |||||||| |||| |
|
|
| T |
42588173 |
atatatatgctccaaccagaaggttttgaagaacaaggaaaggaaaacttggtttgcaggttgaccaaatctctatacggtctaaaacaggcgcctagat |
42588272 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtac |
456 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| | ||||| ||||||| |||||| |||||||| |
|
|
| T |
42588273 |
gttggtacaagagatttgattctttcatagttagccttggatacaacagacttaattcagaccattgtac |
42588342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 87 - 460
Target Start/End: Original strand, 34355035 - 34355408
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
34355035 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
34355134 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355135 |
tattatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
34355234 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
34355235 |
atttagatgctccaaccggaaggatttaaggaacaaggaaaagaaaacctggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
34355334 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
34355335 |
gttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtac |
34355408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 87 - 460
Target Start/End: Original strand, 41721435 - 41721808
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
41721435 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
41721534 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721535 |
tactatcagagtagtgttggcgatgtgtgctgcgttggatttacatcttgaacagctagatgtaaagactgcttttcttcatggagaacttgaagaagaa |
41721634 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
41721635 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
41721734 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
41721735 |
gttggtacaagagatttgattctttcataattagcctcgattacagcagacttagttcagaccattgtacgtac |
41721808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 90 - 460
Target Start/End: Complemental strand, 26978182 - 26977812
Alignment:
| Q |
90 |
aagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttactac |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
26978182 |
aagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttactac |
26978083 |
T |
|
| Q |
190 |
tatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaaatt |
289 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978082 |
tatcaaagtagtgttggcgatgtgtgctgcgttggatttacatcttgaacagctagatgtaaagactgcttttcttcatggagaacttgaagaagaaatt |
26977983 |
T |
|
| Q |
290 |
tatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagatgct |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || |||||||||||||||||||| | |
|
|
| T |
26977982 |
tatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagatgtt |
26977883 |
T |
|
| Q |
390 |
ggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
26977882 |
ggtacaagagatttgattctttcataattagcctcgattacaacagacttagttcagaccattgtacgtac |
26977812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 87 - 460
Target Start/End: Complemental strand, 27876001 - 27875628
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
27876001 |
atcaagtggaacggaatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctacggttgtcagacttac |
27875902 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27875901 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgtttttcttcatggagaacttgaagaagaa |
27875802 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
27875801 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtaaagtctaaagcaggcgcccagat |
27875702 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||| |
|
|
| T |
27875701 |
gttggtacaagagatttgattctttcataattagcctcgattacaacagacttagttaagaccattgaacgtac |
27875628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 101 - 432
Target Start/End: Complemental strand, 18148482 - 18148150
Alignment:
| Q |
101 |
tatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttactactat-cagagta |
199 |
Q |
| |
|
|||||||||||||| |||| |||||||||| || ||| ||||||| | ||||| |||||||||||||| |||||||||||||| ||||| || ||| ||| |
|
|
| T |
18148482 |
tatcgtgcaagactagttgcaaaaggatattcttagacagaaggtgttgactttaatgagatattttctccggttgttagactcactacaatacag-gta |
18148384 |
T |
|
| Q |
200 |
gtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaaatttatatgctcc |
299 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| || | |||||||||| || |||||| | | |||| ||||||||||||||| || |||||| |
|
|
| T |
18148383 |
atgttggcaatgtgtgttgcattggatttacatcttgaatagttagatgtaaagagtgtttttctacctagagagcttgaagaagaaattcatgtgctcc |
18148284 |
T |
|
| Q |
300 |
aaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagc-aggcgcccagatgctggtacaaga |
398 |
Q |
| |
|
|| || ||| |||||| || ||| ||||||||| |||| | ||||||| || |||| | ||||||| |||| | ||||||||| | | |||||||||| |
|
|
| T |
18148283 |
aatcgaaagcatttaaataataagcaaaagaaaaattggtttgcaggttaactaaatctatgtatggtttaaatcaaggcgcccataggttggtacaaga |
18148184 |
T |
|
| Q |
399 |
gatttgattctttcatcattagcctcgattacaa |
432 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||| |
|
|
| T |
18148183 |
caattgattctttcataattagtttcgattacaa |
18148150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 87 - 460
Target Start/End: Complemental strand, 9441383 - 9441010
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
9441383 |
atcaagtggaacggtatcgtgcaaggctggttgtaaaaggatatgctcagaaagaaggtattgacttcaatgagatattttctccggttgtcagacttac |
9441284 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441283 |
tactatcagagtagtgttggcgatgtgtgcttcgttggatttacatcttgaacagctagatgtaaagactgcttttcttcatggagaacttgaagaagaa |
9441184 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
9441183 |
atttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggtttgcaggttgaccaaatctctgtacggtctaaagcaggcgcccagat |
9441084 |
T |
|
| Q |
387 |
gctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
9441083 |
gttggtacaagagatttgattctttcataattagcctcgattacagcagacttagttcagaccattgtacgtac |
9441010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 95 - 456
Target Start/End: Complemental strand, 24595775 - 24595414
Alignment:
| Q |
95 |
gaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttactactatca |
194 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| ||||||||||||||| |||| || |||||||| ||||| ||||| ||||||||||| || ||||||| |
|
|
| T |
24595775 |
gaacgatatcgtgcaagactggtggttaaagggtatgctcagaaagaaagtatagatttcaatgaaatattctccccagttgttagactcacaactatca |
24595676 |
T |
|
| Q |
195 |
gagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaaatttatat |
294 |
Q |
| |
|
|| |||| ||||| ||||||| ||| || ||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
24595675 |
gaatagttttggctatgtgtgttgcgtttgatttacatcttgaacaattagatgtaaaaactgcttttcttcatggagagcttgaagaagaaatatatat |
24595576 |
T |
|
| Q |
295 |
gctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccagatgctggtac |
394 |
Q |
| |
|
||||||||| ||||| ||| | ||||||||||| |||||||||| | ||| ||||||||||| |||||| || ||||| |||||||| ||||| |||||| |
|
|
| T |
24595575 |
gctccaaccagaaggttttgaagaacaaggaaaggaaaacttggtttgcaagttgaccaaatctctgtacggtctaaaacaggcgcctagatgttggtac |
24595476 |
T |
|
| Q |
395 |
aagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtac |
456 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||| ||||||| |||||| |||||||| |
|
|
| T |
24595475 |
aagagatttgattctttcatagttagccttggatacaacagacttaattcagaccattgtac |
24595414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 12933801 - 12933841
Alignment:
| Q |
233 |
cttgaacagctggatgtaaagactgcttttcttcatggaga |
273 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
12933801 |
cttgaacaaatggatgtaaagactgcatttcttcatggaga |
12933841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 152 - 456
Target Start/End: Complemental strand, 7506802 - 7506499
Alignment:
| Q |
152 |
ttcaatgagatattttccccggttgttagacttactactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaa |
251 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| | ||| |||||| |||| ||||| ||||||||||| || ||||||||||||||||| | ||||||| |
|
|
| T |
7506802 |
ttcaatgaaatattctccccagttgttagactcattaccatcagaatagttttggctatgtgtgctgcgtttgatttacatcttgaacaattagatgtaa |
7506703 |
T |
|
| Q |
252 |
agactgcttttcttcatggagaacttgaagaagaaatttatatgctccaaccggaaggatttaaggaacaaggaaaagaaaacttggatagcaggttgac |
351 |
Q |
| |
|
| |||||||||||||||||| | |||||||||||||| |||||||| ||||| ||||| ||| | ||||||||||| |||||||||| | ||| |||||| |
|
|
| T |
7506702 |
aaactgcttttcttcatggacagcttgaagaagaaatatatatgct-caaccagaaggttttgaagaacaaggaaaggaaaacttggtttgcatgttgac |
7506604 |
T |
|
| Q |
352 |
caaatatctgtatggactaaagcaggcgcccagatgctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacat |
451 |
Q |
| |
|
||||| | |||| || ||||| || ||||| ||||| |||||||||||||||||||||||||| ||||||| || ||||| ||||||| |||||| ||| |
|
|
| T |
7506603 |
caaatctttgtacggtctaaaacatgcgcctagatgttggtacaagagatttgattctttcatagttagccttgaatacaacagacttaattcagaccat |
7506504 |
T |
|
| Q |
452 |
tgtac |
456 |
Q |
| |
|
||||| |
|
|
| T |
7506503 |
tgtac |
7506499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 2324896 - 2324789
Alignment:
| Q |
77 |
gatggacatcatcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttg |
176 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||| || | |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
2324896 |
gatggaaatgatcaagtggaacggtatcgttcaagattgatggtaaaaggatatactcagaaagaaggtattgactttgatgagatatttt-tccggttg |
2324798 |
T |
|
| Q |
177 |
ttagactta |
185 |
Q |
| |
|
| ||||||| |
|
|
| T |
2324797 |
tcagactta |
2324789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 87 - 412
Target Start/End: Original strand, 34972411 - 34972732
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaaggtatcgacttcaatgagatattttccccggttgttagacttac |
186 |
Q |
| |
|
|||||||||||| |||| ||||||||| | ||||||| ||||||||| ||||||||||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
34972411 |
atcaagtggaacaatatcatgcaagactactggtaaaagtatatgctcataaagaaggtattgacttcaatgtattatt-----cagttgttagacttac |
34972505 |
T |
|
| Q |
187 |
tactatcagagtagtgttggcgatgtgtgctgcattggatttacatcttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaa |
286 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||| |||||||||||||||| || |||| ||||| || ||||||||||||||| |||||| | ||| |
|
|
| T |
34972506 |
tactatcagagtagtggcggctatgtgtgttgcattgtatttacatcttgaacatctagatgcaaagagtgtttttcttcatggagagcttgaaaaggaa |
34972605 |
T |
|
| Q |
287 |
atttatatgctccaaccggaaggatttaaggaacaagg-aaaagaaaacttggatagcaggttgaccaaatatctgtatggactaaagcaggcgcccaga |
385 |
Q |
| |
|
|||||||| || ||| ||||||||| || ||| |||| |||| ||||||||| | | |||||||| ||| | |||| | ||||| || || |||| | |
|
|
| T |
34972606 |
atttatatactataactggaaggattcaaagaagaaggaaaaaaaaaacttggtttgtaggttgactgaatctatgtacgatctaaaacatgcacccaaa |
34972705 |
T |
|
| Q |
386 |
tgctggtacaagagatttgattctttc |
412 |
Q |
| |
|
|| ||||||| |||||||||||||||| |
|
|
| T |
34972706 |
tgttggtacatgagatttgattctttc |
34972732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 11926920 - 11926865
Alignment:
| Q |
87 |
atcaagtggaacggtatcgtgcaagactggttgtaaaaggatatgctcagaaagaa |
142 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||| |||||| |||||||||||||||| |
|
|
| T |
11926920 |
atcaagtggaaccgtatcgtccaagaccggtggtaaaataatatgctcagaaagaa |
11926865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 29045 - 28954
Alignment:
| Q |
369 |
taaagcaggcgcccagatgctggtacaagagatttgattctttcatcattagcctcgattacaaaagacttagttcagaacattgtacgtac |
460 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
29045 |
taaagcaggcgcccagatgttggtgcaagagatttgattctttcataattagcctcaattacaacagacttagttcagaccattgtacgtac |
28954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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