View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1382_low_6 (Length: 421)
Name: NF1382_low_6
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 67 - 261
Target Start/End: Complemental strand, 43920995 - 43920806
Alignment:
| Q |
67 |
gagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtttgtttcag-agaaattctattgtccctttagagattgttctgctcttttgatcaag |
165 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
43920995 |
gagctttttgaacgatggtgtaag-cgttgtgcgaggctttgtttgtttcgggagaaattctattgtccctttacagattgttcttctcttttgat---- |
43920901 |
T |
|
| Q |
166 |
gaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaagattccatggcatgaagggattgaatgc |
261 |
Q |
| |
|
| |||| || |||||||| |||||||||||||| ||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
43920900 |
-acggaaatgtggcaattacaaattcagaatgtcgtcatagtaatatgatgttttgtgcacgctgtaagattccatggcatgaatggattgaatgc |
43920806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 262
Target Start/End: Original strand, 19270475 - 19270706
Alignment:
| Q |
34 |
gaagctgagttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtt---tgtttcagagaaattctatt |
130 |
Q |
| |
|
||||| ||||||||||||| |||||| || |||||| ||||||| ||||| || | | |||||| |||||| |||| ||||||||| || ||||| | |
|
|
| T |
19270475 |
gaagcggagttttgccgttttattctgcctgccgaggtttttgatcgctggggtcaagggttgtgtgaggctatgttcgatgtttcagaaaagttctact |
19270574 |
T |
|
| Q |
131 |
gtccctttagagattgttctgctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatg |
230 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| || |||| || | ||| ||| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
19270575 |
gtccctttgcagactgttctgctcttttgatcaatgacggaatcgatactgttaaaaactcagaatgtcctaattgtaataggatgttttgtgcaaaatg |
19270674 |
T |
|
| Q |
231 |
taagattccatggcatgaagggattgaatgca |
262 |
Q |
| |
|
|||| |||||||||||||||| || ||||||| |
|
|
| T |
19270675 |
taaggttccatggcatgaaggaatcgaatgca |
19270706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 19314772 - 19314983
Alignment:
| Q |
43 |
ttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtt---tgtttcagagaaattctattgtcccttta |
139 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| | ||| |||||||| | || ||||||||||| |||||| | |||||||||||||| ||| |
|
|
| T |
19314772 |
ttttgccgttctattcttccggccaaggtttttgaacggtggggtaaggcgctttgtgaggctttgttcgatgtttcgaataaattctattgtccatttc |
19314871 |
T |
|
| Q |
140 |
gagattgttctgctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaagattcc |
239 |
Q |
| |
|
||| ||||| || ||||||||| | || ||||| || || |||||||||||||||| ||| | ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
19314872 |
cagactgttcagcacttttgatcgatgatggaacggaagctgttagaaattcagaatgccctaattgtaataggatgttttgtgcacaatgtaaagttcc |
19314971 |
T |
|
| Q |
240 |
atggcatgaagg |
251 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19314972 |
atggcatgaagg |
19314983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 276
Target Start/End: Original strand, 19291927 - 19292052
Alignment:
| Q |
151 |
gctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaagattccatggcatgaag |
250 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||| |||||| ||||||| | |||||||||||||| |||||| ||||||| ||||||||||||||| |
|
|
| T |
19291927 |
gctcttttgatcaatgatggaaccgaggttgttaagaattcaatatgtcctaattgtaataggatgttatgtgcacaatgtaaagttccatggcatgaag |
19292026 |
T |
|
| Q |
251 |
ggattgaatgcattgggtttaagaag |
276 |
Q |
| |
|
|||||||||||| |||||| ||||| |
|
|
| T |
19292027 |
ggattgaatgcagcgggtttgagaag |
19292052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 262
Target Start/End: Original strand, 19254857 - 19254998
Alignment:
| Q |
121 |
aaattctattgtccctttagagattgttctgctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgtttt |
220 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| ||||| |||||||| || | ||| ||||| ||| || ||||||||||| | ||| | |||||||| | |
|
|
| T |
19254857 |
aaattctactgtccctttgcagactgttcagctctgttgatcaatgatgaaacggaggctgttatgaaagcagaatgtccttattgtgaaaggatgttct |
19254956 |
T |
|
| Q |
221 |
gtgcaaaatgtaagattccatggcatgaagggattgaatgca |
262 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19254957 |
gtgcacaatgtaaagttccatggcatgaagggattgaatgca |
19254998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 19260440 - 19260486
Alignment:
| Q |
186 |
aaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgta |
232 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| |||| |||||| |
|
|
| T |
19260440 |
aaattcagaatgtcctaattgtaataggatgttttatgcacaatgta |
19260486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 13206945 - 13206830
Alignment:
| Q |
32 |
tagaagctgagttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtttgtttcagagaaattctattg |
131 |
Q |
| |
|
||||||||||||| || |||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13206945 |
tagaagctgagttatgtcgttctattcttcctgtggtcctttttgaacgctggtgtaaggcgttgtgcgaggctttgtttgttttagagaaattctattg |
13206846 |
T |
|
| Q |
132 |
tccctttagagattgt |
147 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13206845 |
tccctttagagattgt |
13206830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 13206816 - 13206783
Alignment:
| Q |
229 |
tgtaagattccatggcatgaagggattgaatgca |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13206816 |
tgtaagattccatggcatgaagggattgaatgca |
13206783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University