View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1382_low_9 (Length: 397)
Name: NF1382_low_9
Description: NF1382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1382_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 10554715 - 10555017
Alignment:
| Q |
30 |
gaagctgcattgagattcaaaggaaacaaagccaagcttaatttccctcaactcatttctaatttgccttcggatccaaaaccaccgcgtaataagaata |
129 |
Q |
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| T |
10554715 |
gaagctgcattgagattcaaaggaaacaaagccaagcttaatttccctcgactcatttctaatttgccttcggatccaaaaccaccgcgtaataagaata |
10554814 |
T |
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| Q |
130 |
atgcttcatcttcttcctcttcttcttcgcagcttgctccaccgaagcctctttttccttcgtcgtcgtcatcagaagaggtgttcccaaacctaatgca |
229 |
Q |
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| T |
10554815 |
atgcttcatcttcttcctcttcttcttcgcagcttgctccaccgaagcctctttttccttcgtcgttgtcatcagaagaggtgttcccaaacctaatgca |
10554914 |
T |
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| Q |
230 |
atatgcacaagtgctttgtagtaaggatgatgaagatcttcgacgtgccgcttcaagtctttacaataataataatcatcaacaatatcatcatcagaat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10554915 |
atatgcacaagtgctttgtagtaaggatgatgaagatcttcgacgtgccgcttcaagtctttacaataataataatcatcaacaatatcatcatcagaat |
10555014 |
T |
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| Q |
330 |
aat |
332 |
Q |
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||| |
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| T |
10555015 |
aat |
10555017 |
T |
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