View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1383-INSERTION-3 (Length: 487)

Name: NF1383-INSERTION-3
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1383-INSERTION-3
NF1383-INSERTION-3
[»] chr8 (7 HSPs)
chr8 (8-487)||(5268893-5269391)
chr8 (8-461)||(5276369-5276835)
chr8 (8-266)||(5249913-5250171)
chr8 (8-274)||(5272390-5272656)
chr8 (347-487)||(5249658-5249798)
chr8 (333-475)||(5272736-5272878)
chr8 (7-158)||(14944399-14944552)
[»] chr5 (1 HSPs)
chr5 (365-464)||(19569150-19569249)
[»] chr2 (5 HSPs)
chr2 (354-476)||(26315722-26315844)
chr2 (19-131)||(43110308-43110420)
chr2 (8-131)||(26314761-26314884)
chr2 (373-476)||(43110849-43110952)
chr2 (409-452)||(43105420-43105463)


Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Complemental strand, 5269391 - 5268893
Alignment:
Q  8 ccttcttgattaacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatccttcaaaattgtgtcaatgaaaatcgtattagcat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5269391 ccttcttgattaacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatgcttcaaaattgtgtcaatgaaaatcgtattagcat 5269292  T
Q  108 cgctaacaatcctcaaatcacaccctaaagcataagctgatttaatagcagatattattctgtgattaattggtatcctttgaagaactttttcaatatc 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5269291 cgctaacaatcctcaaatcacaccccaaagcataagctgatttaatagcagatattattctgtgattaattggtatcctttgaagaactttttcaatatc 5269192  T
Q  208 ttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaacacaagt-------------------taatattca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||    
T  5269191 ttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaacacaagttaattatttgttataaatataatattca 5269092  T
Q  289 gaatatcgagtgaatgaaagacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaagga 388  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5269091 gaatatcgagtgaatgaaaaacagagtatttttaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaagga 5268992  T
Q  389 gttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatat 487  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5268991 gttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatat 5268893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 5276369 - 5276835
Alignment:
Q  8 ccttcttgattaacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatccttcaaaattgtgtcaatgaaaatcgtattagcat 107  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||| |||| ||||||||| || |||||| ||| | |||||||||    
T  5276369 ccttcttgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcctaaatgcttcaaaatagtttcaatgtaaaacatattagcat 5276468  T
Q  108 cgctaacaatcctcaaatcacaccctaaagcataagctgatttaatagcagatattattctgtgattaattggtatcctttgaagaactttttcaatatc 207  Q
    | ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| ||    
T  5276469 cactaacaatcctcaaatcacaccctaaagcatgagctgatttaattgcaggtattattctgtgatgaattggaatcctttgaagaaccttttcaatctc 5276568  T
Q  208 ttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaa-------caca------agttaatattcagaatat 294  Q
    ||| ||  || ||||||||||||||| ||||||||||||| ||||||  | ||||||||||||||       ||||      ||  |  || |||||| |    
T  5276569 ttcaatggttattccatttgaatgaaactccatcatcattttgtcctacaattccaaaaccaaaaagttaatcacatatattagagacaatgcagaattt 5276668  T
Q  295 cgagtgaatgaaagacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgat 394  Q
    | | ||||||||| |||||||||||   ||||||||||| |||||| || | |||| |||||||| | ||||||  ||||||| || |||||||||||||    
T  5276669 caaatgaatgaaaaacagagtattttacaaaacagagcacatgaaaggaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgat 5276768  T
Q  395 tgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggtttt 461  Q
    |||||||||| |||||||| ||||||||||  | |||||||||||| ||||||||||| || |||||    
T  5276769 tgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgtttt 5276835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 5250171 - 5249913
Alignment:
Q  8 ccttcttgattaacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatccttcaaaattgtgtcaatgaaaatcgtattagcat 107  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||| |||||||||||| ||||||||||  ||||||||||    
T  5250171 ccttgttgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcccaaattcttcaaaattgtttcaatgaaaaatgtattagcat 5250072  T
Q  108 cgctaacaatcctcaaatcacaccctaaagcataagctgatttaatagcagatattattctgtgattaattggtatcctttgaagaactttttcaatatc 207  Q
    | |||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||    
T  5250071 cactaacaatcctcaaatcacaccctaatgcatgtgctgatttaatagcaggtattattctgtgatgaattggtatcctttgaagaactttttcaatctc 5249972  T
Q  208 ttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaa 266  Q
    ||| ||  |||| ||||||||||||| |||||||||||| || ||||||| ||| ||||    
T  5249971 ttcaatggttttaccatttgaatgaatctccatcatcatcctatcctgtaattcaaaaa 5249913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 5272390 - 5272656
Alignment:
Q  8 ccttcttgattaacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatccttcaaaattgtgtcaatgaaaatcgtattagcat 107  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||| || |||||| ||| | |||||||||    
T  5272390 ccttcttgattaacataaccaggattagagttaatctctgagaagcattcactaattcccaaatgcttcaaaatagtttcaatgtaaaacatattagcat 5272489  T
Q  108 cgctaacaatcctcaaatcacaccctaaagcataagctgatttaatagcagatattattctgtgattaattggtatcctttgaagaactttttcaatatc 207  Q
    | ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| ||    
T  5272490 cactaacaatcctcaaatcacaccctaaagcatgagctgatttaattgcaggtattattctgtgatgaattggaatcctttgaagaaccttttcaatctc 5272589  T
Q  208 ttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaaca 274  Q
    ||| ||  ||   |||||||||||||  |||||||||||| |||||| || || |||||||||||||    
T  5272590 ttcaatggttacaccatttgaatgaaattccatcatcattttgtcctataatttcaaaaccaaaaca 5272656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 347 - 487
Target Start/End: Complemental strand, 5249798 - 5249658
Alignment:
Q  347 aaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcaca 446  Q
    ||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||    
T  5249798 aaaaacataccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcaca 5249699  T
Q  447 atcaattatggttttatcgaagtcgaaaactatcacaatat 487  Q
    |||||||||||||||||| || || |||||||  |||||||    
T  5249698 atcaattatggttttatcaaaatcaaaaactacaacaatat 5249658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 333 - 475
Target Start/End: Original strand, 5272736 - 5272878
Alignment:
Q  333 atatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaa 432  Q
    ||||||| ||| | |||||||||||||||  |||||  ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||  | ||||    
T  5272736 atatgaagagaataaaaaacataccatgacggaattccaaggcattgtgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaa 5272835  T
Q  433 ttatcactatcacaatcaattatggttttatcgaagtcgaaaa 475  Q
    |||||||||||||||||||| |||||||| || ||||| ||||    
T  5272836 ttatcactatcacaatcaatgatggttttgtcaaagtcaaaaa 5272878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 14944552 - 14944399
Alignment:
Q  7 accttcttgattaacataaccaggattggtgttaatctcagagaag-cattcactaattcccaaatccttcaaaattgtgtcaatgaaaatcgtattagc 105  Q
    |||||||| ||||||||||||| |||| ||||||||||| ||||||  ||||||| |||||||||| ||||||||| || |||||| ||| |  ||| ||    
T  14944552 accttcttcattaacataaccaagattagtgttaatctctgagaagatattcacttattcccaaatgcttcaaaatagtttcaatgtaaaacacattggc 14944453  T
Q  106 atcgctaacaat-cctcaaatcacaccctaaagcataagctgatttaatagcag 158  Q
    |||||| |||||  ||||||||||||||||||||||  ||||||||||| ||||    
T  14944452 atcgctcacaataactcaaatcacaccctaaagcatgtgctgatttaattgcag 14944399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 365 - 464
Target Start/End: Complemental strand, 19569249 - 19569150
Alignment:
Q  365 aattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatc 464  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  19569249 aattgaaaggcatagtaagaaggagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcacaatcaattaaggttttatc 19569150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 26315722 - 26315844
Alignment:
Q  354 taccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaatt 453  Q
    |||||||||| | || || ||||| ||||||| ||||||||||||||||||  |||||||||||||||||| |||||| ||||| || ||||| |||||     
T  26315722 taccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaata 26315821  T
Q  454 atggttttatcgaagtcgaaaac 476  Q
    |||||||| || |||||||||||    
T  26315822 atggttttgtcaaagtcgaaaac 26315844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 43110308 - 43110420
Alignment:
Q  19 aacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatccttcaaaattgtgtcaatgaaaatcgtattagcatcgctaacaatc 118  Q
    ||||||||| ||||| ||||||||||| ||||| ||||| ||||| || |||| ||||| |||||| |||||||||| ||| || ||||| || ||||||    
T  43110308 aacataacctggattagtgttaatctctgagaaacattccctaataccaaaatgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatc 43110407  T
Q  119 ctcaaatcacacc 131  Q
    |||||||||||||    
T  43110408 ctcaaatcacacc 43110420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 26314761 - 26314884
Alignment:
Q  8 ccttcttgattaacataaccaggattggtgttaatctcagagaagcattcactaattcccaaatccttcaaaattgtgtcaatgaaaatcgtattagcat 107  Q
    ||||||| || ||||||||| ||||| ||||||||||| ||||| ||||| |||||||| || | ||| | |||||| ||||||||||  || || ||||    
T  26314761 ccttcttcatcaacataacctggattagtgttaatctccgagaaacattccctaattccaaagtgctttagaattgtctcaatgaaaaatgtgtttgcat 26314860  T
Q  108 cgctaacaatcctcaaatcacacc 131  Q
    | || |||||||||||||||||||    
T  26314861 cacttacaatcctcaaatcacacc 26314884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 373 - 476
Target Start/End: Original strand, 43110849 - 43110952
Alignment:
Q  373 ggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcga 472  Q
    ||||| |||||||  |||| |||||||||||| |||||||| |||||||||| |||||| |||||||| ||||| |||| ||||||||| || ||||| |    
T  43110849 ggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaa 43110948  T
Q  473 aaac 476  Q
    ||||    
T  43110949 aaac 43110952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 452
Target Start/End: Original strand, 43105420 - 43105463
Alignment:
Q  409 aaacctaattcatcaagaacccaattatcactatcacaatcaat 452  Q
    ||||| || ||||||||||||||||||||||||||||| |||||    
T  43105420 aaaccaaactcatcaagaacccaattatcactatcacattcaat 43105463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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