View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1383-INSERTION-6 (Length: 350)

Name: NF1383-INSERTION-6
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1383-INSERTION-6
NF1383-INSERTION-6
[»] chr2 (2 HSPs)
chr2 (8-350)||(35850329-35850671)
chr2 (8-299)||(35840766-35841054)
[»] chr1 (1 HSPs)
chr1 (313-350)||(44384806-44384843)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 35850671 - 35850329
Alignment:
Q  8 atatggattcttacgctcgttcagtattcgattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctg 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35850671 atatggattcttacgctcgttcagtattcaattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctg 35850572  T
Q  108 cttgatgctgtacataattctttaatgcgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgccttaggtatt 207  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35850571 cttgatgctgttcataattctttaatgcgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgcctaaggtatt 35850472  T
Q  208 atgcttctacctacttaggttaattttttatttatatactgttgactgttttgtttgcattagagctttgaaccctatttcattaaaaacaggacatcaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35850471 atgcttctacctacttaggttaattttttatttatatactgttgactgttttgtttgcattagagctttgaaccctattccattaaaaacaggacatcaa 35850372  T
Q  308 gtaatacacacatacatacgtgtttgttttgattaacccatat 350  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  35850371 gtaatacacacatacatacgtgtgtgttttgattaacccatat 35850329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 35841054 - 35840766
Alignment:
Q  8 atatggattcttacgctcgttcagtattcgattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctg 107  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||| ||    
T  35841054 atatggattcttacgatcattcagtattcgattgtttctttatccgtttagtttggatgatttcgtcggggctcttaactgtcgagttccaaatacgttg 35840955  T
Q  108 cttgatgctgtacataattctttaatgcgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgccttaggtatt 207  Q
     |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | | |||||||   ||||||||||||||    
T  35840954 gttgatgctgttcataattctttaatgcgtgctctgagacgtcatcttgaacatcttgcatctgagggatcaacggttgcatctcaatgccttaggtatt 35840855  T
Q  208 atgcttctacctacttaggttaattttttatttatatactgttgactgttttgtttgcattagagctttgaaccctatttcattaaaaacag 299  Q
    |||||||| ||| || |||||||||| | ||   |||| ||||||||||||||| | |||||||||| | ||| ||||| ||||||||||||    
T  35840854 atgcttcttcctcctcaggttaatttatgat---tatattgttgactgttttgtgtacattagagctctaaactctattccattaaaaacag 35840766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 44384843 - 44384806
Alignment:
Q  313 acacacatacatacgtgtttgttttgattaacccatat 350  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  44384843 acacacatacatacgtgtgtgttttgatcaacccatat 44384806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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