View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383-INSERTION-7 (Length: 676)
Name: NF1383-INSERTION-7
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383-INSERTION-7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 28822098 - 28821752
Alignment:
| Q |
7 |
aaaaaattcataagagatactagaatataatttacaaaggatgtttctacctaggaatgctggcaagatttaatgaataatttacctaatcacaagaaat |
106 |
Q |
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| T |
28822098 |
aaaaaattcataagagata---gaata--atttacaaaggatgtttctacctaggaatgctggcaagatttaatgaataatttacctaatcacaagaaat |
28822004 |
T |
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| Q |
107 |
gattcgctttgggcatgcnnnnnnnnnnnnnnnaccataaacaatgtaaatttttatcctaaaaaatactttatttgattaattgcaggcttagatttca |
206 |
Q |
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| T |
28822003 |
gattcgctttgggcatgctttttttt-------accataaacaatgtaaatttttatcctaaaaaatactttatttgattaattgtaggcttagatttca |
28821911 |
T |
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| Q |
207 |
gacactagtggacatgatctgtgatgctgaaagattgtccatatttcttctgtatttaattatgggcctgcatttgatcacaaattaaatcattgaatta |
306 |
Q |
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| T |
28821910 |
gacactagtggacatgatctgtgatgctgaaagattgtccatatttcttctgtatttaattatgggcctgcatttgatcacaaattaaatcattgaatta |
28821811 |
T |
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| Q |
307 |
attttatatacttcaaaataagtgttttattttataattcattgacaactcatatcatg |
365 |
Q |
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| T |
28821810 |
attttatatacttcaaaataagtgttttattttataattcattgacaactcatatcatg |
28821752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 408 - 676
Target Start/End: Complemental strand, 28821734 - 28821466
Alignment:
| Q |
408 |
ttgaaattgtctataccacccacctctaaatggatcatacttgatgaaattgactaatcttttcctttttcaataataaattgtggaatcattcaattgg |
507 |
Q |
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| T |
28821734 |
ttgaaattgtctataccacccacctctatatggatcatacttgatgaaattgactaatcttttcctttttcaataataaattgtggaatcattcaattgg |
28821635 |
T |
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| Q |
508 |
gtcacctcatcaccccatgcttaaacaacaattttttcatttatttggcaatggatatagtgacctgacccctcaaatgaatgatcgatatattttcaat |
607 |
Q |
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| T |
28821634 |
gtcacctcatcaccccatgcttagacaacaattttttcatttatttggcaatggatatagtgacctgacccctcaaatgaatgatcgatatattttctat |
28821535 |
T |
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| Q |
608 |
ttcccatcaatttgccgtgttgaatttgattgcccataaagaatcttgttatgttatagttagatatca |
676 |
Q |
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| T |
28821534 |
ttcccatcaatttgccgtgttgaatttgattgcccataaagaatcttgttatgttatagttagatatca |
28821466 |
T |
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