View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383-INSERTION-8 (Length: 533)
Name: NF1383-INSERTION-8
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383-INSERTION-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 533
Target Start/End: Original strand, 30834753 - 30835279
Alignment:
| Q |
7 |
atatttggcacaattaaaggcaaattgctgcctaaacaatgaacatttacaattttagacattggaccatccaacctttattgcccaattacaagaaccg |
106 |
Q |
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| T |
30834753 |
atatttggcacaattaaaggcaaattgctgcctaaacaatgaacatttacaattttagacattggaccatccaacctttattgcccaattacaagaaccg |
30834852 |
T |
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| Q |
107 |
aaacaccaaatcaaatatttcctaaagttgagaacaattgattttcctctaaaataagttgaaccttataaacaaattaagttgtcaagcctctctctag |
206 |
Q |
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| T |
30834853 |
aaacaccaaatcaaatatttcctaaagttgaaaacaatggattttcctctaaaataagttgaaccttataaacaaattaagttgtcaagcctctctctag |
30834952 |
T |
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| Q |
207 |
nnnnnnnnngttttctttcaatgagaaagtgctgcatagagaagctgattccaagtatcaggaagtccaggaagacaccaatggctacaatcagttgcca |
306 |
Q |
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| T |
30834953 |
ttgttttttgttttctttcaatgagaaagtgctgcatagagaagctgattccaagtatcaggaagtccaggaagacaccagtggctacaatcagttgcca |
30835052 |
T |
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| Q |
307 |
taacaccactataaccttcaggatgtgcatcttttctatactgtgaaagagttgtcacatctaagaaataaactggcttactcatctttctcaacacctt |
406 |
Q |
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| T |
30835053 |
taacaccactataaccttcaggatgtgcatcttttctatactgtgaaagagttgtcacatctaagaaataaactggcttactcatctttctcaacacctt |
30835152 |
T |
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| Q |
407 |
gttcaccaccatccaagccattggtgtccctccagggtatttcaaaccaaaatatggcactttctcactcatgcatgactttgttggttggttccaatct |
506 |
Q |
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| T |
30835153 |
gttcaccaccatccaagccattggtgtccctccagggtatttcaaaccaaaatatggcactttctcactcatgcatgactttgttggttggttccaatct |
30835252 |
T |
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| Q |
507 |
ctccccctaatgccacacaccatatat |
533 |
Q |
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| T |
30835253 |
ctccccctaatgccacacaccatatat |
30835279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 517
Target Start/End: Original strand, 39304501 - 39304764
Alignment:
| Q |
254 |
attccaagtatcaggaagtccaggaagacaccaatggctacaatcagttgccataacaccactataaccttcaggatgtgcatcttttctatactgtgaa |
353 |
Q |
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| T |
39304501 |
attccaagtatcaggaagtcctggaagacaccaatgactacaatctgttggcataacaccactatacccttctggatgtgcatcttttctgtactgtgac |
39304600 |
T |
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| Q |
354 |
agagttgtcacatctaagaaataaactggcttactcatctttctcaacaccttgttcaccaccatccaagccattggtgtccctccagggtatttcaaac |
453 |
Q |
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| T |
39304601 |
aatgttgtcacatctagaaaatacactggcttctttaatctgcttaataccttattcactatcacccaagccattggtgttcctgctgggtacttcaaac |
39304700 |
T |
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| Q |
454 |
caaaatatggcactttctcactcatgcatgactttgttggttggttccaatctctccccctaat |
517 |
Q |
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| T |
39304701 |
caaagaatggttctgtctctctcatgcatgattttgctggttggttccaatctctccccctaat |
39304764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 30270413 - 30270354
Alignment:
| Q |
241 |
catagagaagctgattccaagtatcaggaagtccaggaagacaccaatggctacaatcag |
300 |
Q |
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| T |
30270413 |
catagagcagttgattccaagtatcaggcaaaccaggaagacaccaatggctacaatcag |
30270354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 29362337 - 29362396
Alignment:
| Q |
241 |
catagagaagctgattccaagtatcaggaagtccaggaagacaccaatggctacaatcag |
300 |
Q |
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| T |
29362337 |
catagagtagttaattccaagtatcaggcaaaccaggaagacaccaatggctacaatcag |
29362396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 15113399 - 15113354
Alignment:
| Q |
254 |
attccaagtatcaggaagtccaggaagacaccaatggctacaatca |
299 |
Q |
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| T |
15113399 |
attccaagtatcaggaacaccaggcagacaccaatggctgcaatca |
15113354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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