View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_high_10 (Length: 315)
Name: NF13830_high_10
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_high_10 |
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| [»] scaffold1079 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 6352099 - 6352388
Alignment:
| Q |
9 |
agcaaaggcaaagttaagccatttcattcatactcaacgaatacaaagttgttggtacaatattgaaaatatgggggctggtgtgatatagagatgctct |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6352099 |
agcaaaggcaaagttaagccatttcattcatactcaacgaatacaaagttgttggtacaatattgaaaatatgggggctagtgtgatatagagatgctcc |
6352198 |
T |
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| Q |
109 |
agctatctgtcagagnnnnnnngaccgattggttctgtatcaaaggaatcccatcatccatacataacaaattggtgtggtagattcaaatttaaatata |
208 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6352199 |
agctatctgtcagagaaaaaaagactgattggttctgtatcaaaggaatcccatcatccatacataacaaattggtgtggtagattcaaattttaatata |
6352298 |
T |
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| Q |
209 |
tgaatagtaaataaaactagtattcgtattgagactagaactcataggcaagaaaatagatttatgaatggaatgaaatatgtaatattt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6352299 |
tgaatagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaatatgtaatattt |
6352388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 10404203 - 10404122
Alignment:
| Q |
217 |
aaataaaactagtattcgtattgagactagaactcataggcaagaaaatagatttatgaatggaatgaaatatgtaatattt |
298 |
Q |
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| T |
10404203 |
aaataaaactagtattggtattgagactagaaatcatagggaagaaaatagatttatgaatggaataaaatatataatattt |
10404122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 48097158 - 48097252
Alignment:
| Q |
20 |
agttaagccatttcattcatactcaacgaatacaaagttgttggtacaatattgaaaatatgggggctggtgtgatatagagatgctctagctat |
114 |
Q |
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| T |
48097158 |
agttaagtcatttcattcataatcaacaaatacaaagtagttggtacattattgaaaatacgagggctggagtgatatatggatgccctagctat |
48097252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 12458717 - 12458794
Alignment:
| Q |
9 |
agcaaaggcaaagttaagccatttcattcatactcaacgaatacaaagttgttggtacaatattgaaaatatgggggct |
87 |
Q |
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|||||||| |||||||| ||||||||||||| |||| ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
12458717 |
agcaaagg-aaagttaatgcatttcattcataatcaaagaatacaaagtaagcggtacattatagaaaatatgggggct |
12458794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 24439345 - 24439298
Alignment:
| Q |
9 |
agcaaaggcaaagttaagccatttcattcatactcaacgaatacaaagt |
57 |
Q |
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|||||||||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
24439345 |
agcaaaggcaaa-ttaattcatttcattcataatcaacgaatacaaagt |
24439298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 131 - 298
Target Start/End: Complemental strand, 16899729 - 16899563
Alignment:
| Q |
131 |
gaccgattggttctgtatcaaaggaatcccatcatccatacataacaaattggtgtggtagattcaaatttaaatatatgaatagtaaataaaactagta |
230 |
Q |
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| T |
16899729 |
gaccgattggctctgtatcaatggaatctcatcatccatt-ataacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagta |
16899631 |
T |
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| Q |
231 |
ttcgtattgagactagaactcataggcaagaaaatagatttatgaatggaatgaaatatgtaatattt |
298 |
Q |
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| T |
16899630 |
ttcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaatatgcaatattt |
16899563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 131 - 298
Target Start/End: Complemental strand, 18348244 - 18348078
Alignment:
| Q |
131 |
gaccgattggttctgtatcaaaggaatcccatcatccatacataacaaattggtgtggtagattcaaatttaaatatatgaatagtaaataaaactagta |
230 |
Q |
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|||||||||| |||||||||| |||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
18348244 |
gaccgattggctctgtatcaatggaatctcatcatccatt-ataacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagta |
18348146 |
T |
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| Q |
231 |
ttcgtattgagactagaactcataggcaagaaaatagatttatgaatggaatgaaatatgtaatattt |
298 |
Q |
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| T |
18348145 |
ttcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaaaatgcaatattt |
18348078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 23600072 - 23600178
Alignment:
| Q |
8 |
aagcaaaggcaaagttaagccatttcattcatactcaacgaatacaaagttgttggtacaatattgaaaatatgggggctggtgtgatatagagatgctc |
107 |
Q |
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||||||| | |||||||| ||||||||| |||| ||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
23600072 |
aagcaaatgtaaagttaaaccatttcatccataatcaacaaatataaagttgttgaaacaatattgaaaatatgggggctagtgtgatatagggatgctc |
23600171 |
T |
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| Q |
108 |
tagctat |
114 |
Q |
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||||||| |
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| T |
23600172 |
tagctat |
23600178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 131 - 298
Target Start/End: Original strand, 13236247 - 13236413
Alignment:
| Q |
131 |
gaccgattggttctgtatcaaaggaatcccatcatccatacataacaaattggtgtggtagattcaaatttaaatatatgaatagtaaataaaactagta |
230 |
Q |
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|||||||||| |||||||||| |||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
13236247 |
gaccgattggctctgtatcaatggaatctcatcatccatt-ataacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagta |
13236345 |
T |
|
| Q |
231 |
ttcgtattgagactagaactcataggcaagaaaatagatttatgaatggaatgaaatatgtaatattt |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| |
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| T |
13236346 |
ttcgtattgagactagaactcatagggaagaaaatagatttatgaatggaataaaaaatgcaatattt |
13236413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 136 - 289
Target Start/End: Complemental strand, 729 - 579
Alignment:
| Q |
136 |
attggttctgtatcaaaggaatcccatcatccatacataacaaattggtgtggtagattcaaatttaaatatatgaatagtaaataaaactagtattcgt |
235 |
Q |
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||||| |||||||||| |||||| ||||||| ||||||||| ||||||||||||| ||||| || || ||||||| ||||| |||||| |||| | |
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| T |
729 |
attggctctgtatcaatggaatctcatcatctatacataacgaattggtgtggtatattcatatcataacatatgaacagtaag---aactagcattctt |
633 |
T |
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| Q |
236 |
attgagactagaactcataggcaagaaaatagatttatgaatggaatgaaatat |
289 |
Q |
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||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
632 |
attgagactcgaactcatagggaagaaaatagatttatggatggaatcaaatat |
579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 40230907 - 40230969
Alignment:
| Q |
229 |
tattcgtattgagactagaactcataggcaagaaaatagatttatgaatggaatgaaatatgt |
291 |
Q |
| |
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||||| ||||||||||||||||||| || |||||||||||||| ||| | |||||||||||| |
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|
| T |
40230907 |
tattcttattgagactagaactcatcgggaagaaaatagatttgtgagttcaatgaaatatgt |
40230969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 16863391 - 16863314
Alignment:
| Q |
9 |
agcaaaggcaaagttaagccatttcattcatactcaacgaatacaaagttgttggtacaatattgaaaatatgggggct |
87 |
Q |
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|||||||| |||||||| ||||||||||||| |||| ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
16863391 |
agcaaagg-aaagttaatgcatttcattcataatcaaagaatacaaagtaagcggtacattatagaaaatatgggggct |
16863314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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