View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13830_low_1 (Length: 652)

Name: NF13830_low_1
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13830_low_1
NF13830_low_1
[»] chr5 (1 HSPs)
chr5 (1-636)||(7296101-7296742)


Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Original strand, 7296101 - 7296742
Alignment:
Q  1 acaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcacaaaatagaaaattctacgaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7296101 acaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcaaaaaatagaaaattctacgaagg 7296200  T
Q  101 tggttcatgtttgtattacgagtacttttcgaaccccttcctttatatgttattttaggtgagtgttgttgttgtt---tatatttaggtcgaatttccc 197  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||| |||     
T  7296201 tggttcatgtttgtattacgagtgcttttcgaaccccttcctttatatgttattttaggtgattgttgttgttgttgtttatatttaggtcgaatatcct 7296300  T
Q  198 taatacttctcctcggttaatgagtcaagtattaactatatgtctttnnnnnnnnnnnnnnn---cttctatatatatcattttatcattcaaaataaag 294  Q
    | |||||||||||| ||| |||||||||||||||||||||| |||||                  ||||||||||||||||||| |||||||||||||||    
T  7296301 tgatacttctcctcagttgatgagtcaagtattaactatatttctttaaaaaaaaaaaaaaaaatcttctatatatatcattttgtcattcaaaataaag 7296400  T
Q  295 aacaaagtaattagaacataaaatacaaggagaggagtctccgtaatcctccgacggaaccctctccatcaccatggatgatgcattcaaggtgattcaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7296401 aacaaagtaattagaacataaaatacaaggagaggagtctccgtaatcctccgacggaaccctctccatcaccatggataatgcattcaaggtgattcaa 7296500  T
Q  395 acccttaatttctacctttcagaacacccttctatagttggatttcgatggagtcacactcaatcttggggttcaacatggtcttttatctttatgtcca 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7296501 acccttaatttctacctttcagaacacccttctatagttggatttcgatggagtcacactcaatcttggggttcaacatggtcttttatctttatgtcca 7296600  T
Q  495 tagcaatttacattgtaacctctcttttactccaccttttattatctatctttctttgccataccaaacatattcctcttggccctttacctgcacttca 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7296601 tagcaatttacattgtaacctctcttttactccaccttttattatctatctttctttgccataccaaacatattcctcttggccctttacctgcacttca 7296700  T
Q  595 ttctctcaccgtgtccatcgtatccaccatcatattccttgg 636  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7296701 ttctctcaccgtgtccatcgtatccaccatcatattccttgg 7296742  T

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