View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_low_14 (Length: 245)
Name: NF13830_low_14
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_low_14 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34820378 - 34820622
Alignment:
| Q |
1 |
aactattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgac |
100 |
Q |
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| T |
34820378 |
aactattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgac |
34820477 |
T |
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| Q |
101 |
actctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccg |
200 |
Q |
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| T |
34820478 |
actctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccg |
34820577 |
T |
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| Q |
201 |
acatcaattttagtaatactttcgtcaacaaaactactattattt |
245 |
Q |
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| T |
34820578 |
acatcaattttagtgatactttcgtcaacaaaactactattattt |
34820622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 34820262 - 34820505
Alignment:
| Q |
2 |
actattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgaca |
101 |
Q |
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| T |
34820262 |
actattatattcagctttgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgata |
34820361 |
T |
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| Q |
102 |
ctctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccga |
201 |
Q |
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| T |
34820362 |
ctctcgtcaacaaaacaactattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaa |
34820461 |
T |
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| Q |
202 |
catcaattttagtaatactttcgtcaacaaaactactattattt |
245 |
Q |
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| T |
34820462 |
catcattttttatgacactctcgtcaacaaaactaatattattt |
34820505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 34820498 - 34820739
Alignment:
| Q |
4 |
tattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacact |
103 |
Q |
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| T |
34820498 |
tattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatact |
34820597 |
T |
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| Q |
104 |
ctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgaca |
203 |
Q |
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| T |
34820598 |
ttcgtcaacaaaactactattatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaata |
34820697 |
T |
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| Q |
204 |
tcaattttagtaatactttcgtcaacaaaactactattattt |
245 |
Q |
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||| |||| || ||||| |||||||||||||||||||||||| |
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| T |
34820698 |
tcattttttgtgatactctcgtcaacaaaactactattattt |
34820739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 34820613 - 34820856
Alignment:
| Q |
2 |
actattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgaca |
101 |
Q |
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| T |
34820613 |
actattatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgata |
34820712 |
T |
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| Q |
102 |
ctctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccga |
201 |
Q |
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| T |
34820713 |
ctctcgtcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaa |
34820812 |
T |
|
| Q |
202 |
catcaattttagtaatactttcgtcaacaaaactactattattt |
245 |
Q |
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||||| |||| || ||||| |||||||||||||||||||||||| |
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| T |
34820813 |
catcattttttgtgatactctcgtcaacaaaactactattattt |
34820856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 34820176 - 34820388
Alignment:
| Q |
33 |
tcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaactaatattatttttag |
132 |
Q |
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|||||||| ||||||||||||||| ||| |||| ||||| ||| |||||||||| ||||||| ||| |||||||||||||||||| |||||| || || |
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| T |
34820176 |
tcagcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcag |
34820275 |
T |
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| Q |
133 |
cttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacgtaccgacatcaattttagtaatactttcgtcaacaaa |
232 |
Q |
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||| |||||||||||||||||||| |||||||||| | ||||||||||| ||||||| |||||||| | |||| |||| || ||||| ||||||||||| |
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| T |
34820276 |
ctttgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaa |
34820375 |
T |
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| Q |
233 |
actactattattt |
245 |
Q |
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| T |
34820376 |
acaactattattt |
34820388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 34820730 - 34820878
Alignment:
| Q |
2 |
actattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgaca |
101 |
Q |
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|||||||||||||||||||||| |||| || || |||||||||||| ||| ||||||| |||| |||||| || ||||||||||||||||| ||| | |
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| T |
34820730 |
actattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgata |
34820829 |
T |
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| Q |
102 |
ctctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgt |
150 |
Q |
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|||||||||||||||||| |||||||| |||||||||| | ||||||| |
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| T |
34820830 |
ctctcgtcaacaaaactactattatttccagcttcatctaacttgtcgt |
34820878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 34819904 - 34819985
Alignment:
| Q |
37 |
cgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
118 |
Q |
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| T |
34819904 |
cgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatactctcgtcaacaaaact |
34819985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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