View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_low_16 (Length: 201)
Name: NF13830_low_16
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 34820740 - 34820924
Alignment:
| Q |
1 |
tcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
100 |
Q |
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| T |
34820740 |
tcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
34820839 |
T |
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| Q |
101 |
caaaactactattatttccagcttcatctaacttgtcgtttgttataggcaacttgtttgaagaaattatgttcagcatttgaag |
185 |
Q |
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| T |
34820840 |
caaaactactattatttccagcttcatctaacttgtcgtttgttataggcaacttgtttgaagaaattatgttcagcatttgaag |
34820924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 34820625 - 34820761
Alignment:
| Q |
3 |
agcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaaca |
102 |
Q |
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| T |
34820625 |
agcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaaca |
34820724 |
T |
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| Q |
103 |
aaactactattatttccagcttcatctaacttgtcgt |
139 |
Q |
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| T |
34820725 |
aaactactattattttcagcttcatctaatttgtcgt |
34820761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34820272 - 34820400
Alignment:
| Q |
1 |
tcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
100 |
Q |
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||||||| ||| ||||||||||| |||| ||||||| |||| |||||||||||||||||| || | |||||| |||||||||||||||||||||||||| |
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| T |
34820272 |
tcagctttgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaa |
34820371 |
T |
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| Q |
101 |
caaaactactattatttccagcttcatct |
129 |
Q |
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|||||| |||||||||| ||||||||||| |
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| T |
34820372 |
caaaacaactattattttcagcttcatct |
34820400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 34820508 - 34820642
Alignment:
| Q |
3 |
agcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaaca |
102 |
Q |
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|||||||||| ||||||||||| |||| ||||||| || ||||||||||||| |||||| | | |||| |||||| |||| |||||||| ||||||||| |
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| T |
34820508 |
agcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaaca |
34820607 |
T |
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| Q |
103 |
aaactactattatttccagcttcatctaacttgtc |
137 |
Q |
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| T |
34820608 |
aaactactattatttttagcttcatctaagttgtc |
34820642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 34820389 - 34820527
Alignment:
| Q |
1 |
tcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
100 |
Q |
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|
|||||||||||| |||| || || |||| ||||||| ||||||||||| |||| |||||| || ||||||||||||||||| ||| ||||||||||| |
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| T |
34820389 |
tcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaa |
34820488 |
T |
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| Q |
101 |
caaaactactattatttccagcttcatctaacttgtcgt |
139 |
Q |
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|||||||| |||||||| |||||||||| | ||||||| |
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| T |
34820489 |
caaaactaatattatttttagcttcatctgatttgtcgt |
34820527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 34820180 - 34820278
Alignment:
| Q |
26 |
cgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaacaaaactactattatttccagctt |
124 |
Q |
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|||| ||||||| ||||||| ||||||||| ||||| || | ||||||||| |||||||||||| ||||||||||||||||||||||||| | |||||| |
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| T |
34820180 |
cgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctt |
34820278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 34819946 - 34819985
Alignment:
| Q |
68 |
taccaacatcattttttgtgatactctcgtcaacaaaact |
107 |
Q |
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| T |
34819946 |
taccatcatcatttttggtgatactctcgtcaacaaaact |
34819985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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