View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_low_3 (Length: 480)
Name: NF13830_low_3
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 31216931 - 31216473
Alignment:
| Q |
1 |
tataaaccattggttgatgagaacgtgcatggcatgataggaaacgacaacaaccaaattttgttggttagtacatcctagtcatcacaacaagatacgt |
100 |
Q |
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| T |
31216931 |
tataaaccattggttgatgagaacgtgcatggcatgataggaaacgacaacaaccaaattttgttggttagtacatcctagtcatcacaacaagatacgt |
31216832 |
T |
|
| Q |
101 |
gttgcttaacttatgggccacattattgaatatatggatcaatgaacagaaacaaaatcagggtacatctcacatggttatgcccccttgccctttggag |
200 |
Q |
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| T |
31216831 |
gttacttaacttatgggccacattattgaatatatggatcaatgaacagaaacaaaatcagggtacatctcacatggttatgcccccttgccctttggag |
31216732 |
T |
|
| Q |
201 |
atataatagatagatatagattcatttgttcatctcttcaaccgtgggcatggccgttggattttctcaatttaattacaattacaataagaatgtcggt |
300 |
Q |
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| T |
31216731 |
atataatagatag--atagattcatttgttcatctcttcaaccgtgggcatggccgttggattttttcaatttaattacaattacaataagaatgtcggt |
31216634 |
T |
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| Q |
301 |
tgaataatgcacatcttatttggtatgggacatgcatctttgtgtcctatagttaagtagtagtagtgtatcatggatagccatgatctttgattcttat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31216633 |
tgaataatgcacatcttatttggtatgggacatgcatctttgtgtcctatagtta---agtagtagtgtatcatggatagccatgatctttgattcttat |
31216537 |
T |
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| Q |
401 |
ctagtttgtaaattatttagaggtatttgttaattgaaagagaaatttatatgtgacattgttt |
464 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31216536 |
ctagtttgtaaattatttagaggtatttattaattgaaagagaaatttatatgtgacattgttt |
31216473 |
T |
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