View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_low_4 (Length: 442)
Name: NF13830_low_4
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 59 - 433
Target Start/End: Complemental strand, 31370586 - 31370211
Alignment:
| Q |
59 |
ccggtccactataaccgttcctttacttaacaagaacatgcgattaggatctgaaaacgttgcagagggacaatgttttggacctgaagatttgttatac |
158 |
Q |
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| T |
31370586 |
ccggtccactataaccgctcctttacgtaacaacaacatgagattaggatctgaaaacgttgcagacggagaactttttggacctgaagatttggtatac |
31370487 |
T |
|
| Q |
159 |
gacgctgataagggtgtggtttatactggttgtgaagatgggtggataaagagaataacggtgaatgaatcggtggttgaagattgggttaacaccggtg |
258 |
Q |
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| T |
31370486 |
gacgctgacaagggtttgatgtatactggttgtgaagatgggtggattaagagaatatcagtgaatggatcagtggttgaagattggattaacacaggtg |
31370387 |
T |
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| Q |
259 |
gaagaccacttggtttggcatttgatggaaatggtcaacttattgttgcagacgcatataaggtaac-ggttttgaaataaatgttggatttgaatatgt |
357 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||| | |||||| ||||||||| ||||||||||||| |
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| T |
31370386 |
gaagaccacttggtttggcttttgatggaaatggtcaacttattattgcagacgcagacaaggtaactgcttttgatataaatgttagatttgaatatgt |
31370287 |
T |
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| Q |
358 |
tttttctgcaaatggaaatcaactaaattatttctttttatttaaggtaaaaagttaaggaaattactgtcctatg |
433 |
Q |
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| T |
31370286 |
tttttctgcaaatggaaatcaactaaattatttctttttatttaaggtaaaaagttaaggaaattactgtcctatg |
31370211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 31385247 - 31384940
Alignment:
| Q |
18 |
gacccattggaaccggttcattttcccatcgacaagctaaaccggtccactataaccgttcctttacttaacaagaacatgcgattaggatctgaaaacg |
117 |
Q |
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| T |
31385247 |
gacccattggaaccggttcattttcccctcgacaagataaaccggtccgctataaccgttcctttacttaacaagaacatgcgattaggatctgaaaaag |
31385148 |
T |
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| Q |
118 |
ttgcagagggacaatgttttggacctgaagatttgttatacgacgctgataagggtgtggtttatactggttgtgaagatgggtggataaagagaataac |
217 |
Q |
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||||||||||||| | ||||||||||||||||| ||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31385147 |
ctgcagagggacaagttcttggacctgaagatttggtatacgatgctgctttgggtgtagtttatactggttgtgaagatgggtggataaagagaataac |
31385048 |
T |
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| Q |
218 |
ggtgaatgaatcggtggttgaagattgggttaacaccggtggaagaccacttggtttggcatttgatggaaatggtcaacttattgttgcagacgcatat |
317 |
Q |
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| T |
31385047 |
ggtgaatgaatcggtggttgaagattgggttaacacaggtggaagaccacttggtttggcttttgatggaaatggtgatcttattgttgcagacgcatat |
31384948 |
T |
|
| Q |
318 |
aaggtaac |
325 |
Q |
| |
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|||||||| |
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| T |
31384947 |
aaggtaac |
31384940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 59 - 385
Target Start/End: Complemental strand, 31405719 - 31405390
Alignment:
| Q |
59 |
ccggtccactataaccgttcctttacttaacaagaacatgcgattaggatctgaaaacgttgcagagggacaatgttttggacctgaagatttgttatac |
158 |
Q |
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||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||| |
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| T |
31405719 |
ccggtccactataaccgctcctttacgtaacaacaacatgagattaggatctgaaaacgttgcagacggagaactttttggacctgaagatttggtatac |
31405620 |
T |
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| Q |
159 |
gacgctgataagggtgtggtttatactggttgtgaagatgggtggataaagagaataacggtgaatgaatcggtggttgaagattgggttaacaccggtg |
258 |
Q |
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| T |
31405619 |
gacgctgacaagggtttgatgtatactggttgtgaagatgggtggattaagagaatatcagtgaatggatcagtggttgaagattggattaacacaggtg |
31405520 |
T |
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| Q |
259 |
gaagaccacttggtttggcatttgatggaaatggtcaacttattgttgcagacgcatataaggtaac-ggttttgaaataaatgttggatttgaa--tat |
355 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||| | |||||| ||||||||| |||||||| | | |
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| T |
31405519 |
gaagaccacttggtttggcttttgatggaaatggtcaacttattattgcagacgcagacaaggtaactgcttttgatataaatgttagatttgaaatttt |
31405420 |
T |
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| Q |
356 |
gttttttctgcaaatggaaatcaactaaat |
385 |
Q |
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| T |
31405419 |
cttttttctgcaaatggaaatcaagtaaat |
31405390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 194 - 429
Target Start/End: Original strand, 31932782 - 31933014
Alignment:
| Q |
194 |
agatgggtggataaagagaataacggtgaatgaatcggtggttgaagattgggttaacaccggtggaagaccacttggtttggcatttgatggaaatggt |
293 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
31932782 |
agatgggtggataaagagaatcacagtgaatgaatcggtggttgaagattgggttaacaccgatggaagaccacttggtttggcttttgatggaaatggt |
31932881 |
T |
|
| Q |
294 |
caacttattgttgcagacgcatataaggtaac-ggttttgaaataaatgttggatttgaatatgttttttctgcaaatggaaatcaactaaattatttct |
392 |
Q |
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||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||| || ||| | |
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| T |
31932882 |
caacttattgttgcagacgcacataaggtaactggttttcatataaatgttggatttcaatatgttttttctgcaaatagaaatcaactagataatt--t |
31932979 |
T |
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| Q |
393 |
ttttatttaaggtaaaaagttaaggaaattactgtcc |
429 |
Q |
| |
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|||| || |||| ||||||||||| ||||||||||| |
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| T |
31932980 |
ttttgtt--aggtgaaaagttaaggcaattactgtcc |
31933014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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