View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_low_5 (Length: 423)
Name: NF13830_low_5
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Complemental strand, 52409613 - 52409214
Alignment:
| Q |
21 |
atatgatgatgagagaaagaactctaattccaacatttgtcttttgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaa |
120 |
Q |
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| T |
52409613 |
atatgatgatgagagaaagaactctaattccaacatttgtcttctgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaa |
52409514 |
T |
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| Q |
121 |
agccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatagttaatttgcaccttaattagg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52409513 |
agccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatatttaatttgcaccttaattagg |
52409414 |
T |
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| Q |
221 |
cttgtgtacaattaatctttatgtccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataag |
320 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409413 |
cttgtgtacaattaatctttatttccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataag |
52409314 |
T |
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| Q |
321 |
aacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatctcactcg |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52409313 |
aacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccattgccaacttcatcacactcg |
52409214 |
T |
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