View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_low_6 (Length: 385)
Name: NF13830_low_6
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 47125347 - 47124996
Alignment:
| Q |
19 |
ctaatagcaaataacttctttttg--aaggattttgattttgtgaaatgcagtttacactaaaacaaaccttttacaacttaacaacttcattttcaatt |
116 |
Q |
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| T |
47125347 |
ctaatagcaaataacttcttttttgaaaggattttgattttgtgaaatgcagtttacactaaaacaaaccttttacaacttaacaacttcattttcaatt |
47125248 |
T |
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| Q |
117 |
gaagatcactgtgttgtttgaacctctcatgcatgtcttacatattttagcggtagctaaggaatatattacacttgaaaactttccctacgaggggttg |
216 |
Q |
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| T |
47125247 |
gaagatcact-------ttgaacctctcatacatgtcttacatattttagcggtagctaaggaatatattacacttgaaaactttccctacgaggggttg |
47125155 |
T |
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| Q |
217 |
agaaacaagaaaatcccatgacaatgaatataggtaaaaattatggcattgatctttaaagatctttaaagcaaatgtgctnnnnnnnnnnnnnnnnnnn |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125154 |
agaaacgagaaaatcccatgacaatgaatataggtaaaaattatggcattgatctttaaagatctttaaagcaaatgtgctaaaagaagtaaagaaaaaa |
47125055 |
T |
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| Q |
317 |
nnnntcattaaggaagaccacattgaacaagagttcacttttttaggctcacacctttg |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125054 |
taaatcattaaggaagaccacattgaacaagagttcacttttttaggctcacacctttg |
47124996 |
T |
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