View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13830_low_7 (Length: 367)
Name: NF13830_low_7
Description: NF13830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13830_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 353
Target Start/End: Original strand, 2665950 - 2666302
Alignment:
| Q |
5 |
acatgtcagtatctgtgttgtgtccgatgtccatgtccgtatacatgcataacaaaatattaagacaatattttaatgtgatatgtgagtgtgattgtgt |
104 |
Q |
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| T |
2665950 |
acatgtcactatctgtgttgtgtccgatgtccatatccgtatacatgcataacaaaatattaagacaatattttaatatgatatgtgagggtgattgtgt |
2666049 |
T |
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| Q |
105 |
gcctgatgaagnnnnnnncgcaatcatggattggtttgtgtaaataataatagaatgttgaaagtctcaagttagtatcccatgttctacac----ttgt |
200 |
Q |
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| T |
2666050 |
gcctgatgaagaaaaaaacgcaatcatggattggtttgtgtaaataataatagaatgttgaaagtctcaagttagtatcccatgttctacacttctttct |
2666149 |
T |
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| Q |
201 |
ttctttctttgttttcctctttttctgcatatggaatgtaaattttcctttgactattatgtttaaaaagaaaagtnnnnnnnactaatttgggaatatt |
300 |
Q |
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| T |
2666150 |
ttctttctttgttttcctctttttctgcatatggaatgtaaattttcctttgactattatgtttaaaaagaaaagtgggggggactaatttgggaatatt |
2666249 |
T |
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| Q |
301 |
atttgaaagagagtctttggtttgcttcaaatatggactggctaatgcctatg |
353 |
Q |
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| T |
2666250 |
atttgaaagagagtctttggtttgcttcaaatatggactgtctaatgcctatg |
2666302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 18190164 - 18190208
Alignment:
| Q |
8 |
tgtcagtatctgtgttgtgtccgatgtccatgtccgtatacatgc |
52 |
Q |
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| T |
18190164 |
tgtcagtatccgtgtcgtgtccggtgtccatgtccgtatccatgc |
18190208 |
T |
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