View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13831_high_10 (Length: 446)

Name: NF13831_high_10
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13831_high_10
NF13831_high_10
[»] chr1 (12 HSPs)
chr1 (172-432)||(35394907-35395166)
chr1 (257-356)||(26330272-26330371)
chr1 (266-312)||(16976157-16976203)
chr1 (93-190)||(11993799-11993898)
chr1 (268-318)||(25427418-25427468)
chr1 (59-138)||(26645954-26646033)
chr1 (245-310)||(17622190-17622254)
chr1 (5-49)||(20185814-20185860)
chr1 (90-137)||(26330494-26330541)
chr1 (1-80)||(27776100-27776180)
chr1 (267-312)||(11993973-11994017)
chr1 (70-137)||(31900539-31900607)
[»] chr6 (5 HSPs)
chr6 (257-356)||(23947961-23948060)
chr6 (1-137)||(23948181-23948313)
chr6 (18-134)||(23905658-23905772)
chr6 (269-356)||(18603138-18603225)
chr6 (257-312)||(23905896-23905951)
[»] scaffold0008 (2 HSPs)
scaffold0008 (18-109)||(264267-264356)
scaffold0008 (200-308)||(264067-264174)
[»] chr2 (3 HSPs)
chr2 (19-168)||(19993810-19993961)
chr2 (5-135)||(20662252-20662381)
chr2 (270-356)||(19993622-19993708)
[»] chr5 (2 HSPs)
chr5 (200-312)||(18240699-18240809)
chr5 (14-137)||(33699845-33699967)
[»] chr4 (4 HSPs)
chr4 (1-182)||(8321513-8321695)
chr4 (242-310)||(25229964-25230031)
chr4 (1-190)||(25229722-25229914)
chr4 (19-103)||(7171341-7171424)
[»] chr7 (8 HSPs)
chr7 (2-104)||(11728477-11728578)
chr7 (1-153)||(27223331-27223485)
chr7 (5-120)||(5486674-5486787)
chr7 (257-338)||(27223581-27223662)
chr7 (248-356)||(5487564-5487671)
chr7 (5-57)||(8253069-8253120)
chr7 (10-57)||(7776149-7776196)
chr7 (266-355)||(15962990-15963078)
[»] chr8 (4 HSPs)
chr8 (246-356)||(17748244-17748354)
chr8 (59-192)||(260601-260737)
chr8 (59-192)||(655184-655320)
chr8 (59-192)||(840919-841055)
[»] chr3 (2 HSPs)
chr3 (90-136)||(21806674-21806720)
chr3 (1-45)||(15487638-15487683)
[»] scaffold0636 (1 HSPs)
scaffold0636 (256-308)||(7483-7535)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 172 - 432
Target Start/End: Complemental strand, 35395166 - 35394907
Alignment:
Q  172 catctgagaggatatctcatatattatcattggataatctcgcagtattgtgtggattggactagaacggttaaggtgaactaagataacttcattgtgt 271  Q
    ||||||||||| ||||||||  | ||| |||||||||||| | ||||||||| |||||||||||| |||| ||| |||||| |||||||||| |||||||    
T  35395166 catctgagagggtatctcatgcactattattggataatcttgtagtattgtggggattggactagcacgggtaaagtgaaccaagataactttattgtgt 35395067  T
Q  272 catcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttttgatatatattttta 371  Q
    |||||||| || | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35395066 catcttctttaccccttaactcctttatttgatagttcaaatgcaagcattgtcatccaatttcttcaagtatcaaattca-ttttgatatatattttta 35394968  T
Q  372 cttgtgactattgtttttactttagcttcttccacgatggatgatttttgagttttatgtg 432  Q
     ||||||||||| ||||||||| |||||||||||||   |||||||||||| |||||||||    
T  35394967 tttgtgactattatttttacttcagcttcttccacggcagatgatttttgaattttatgtg 35394907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 356
Target Start/End: Complemental strand, 26330371 - 26330272
Alignment:
Q  257 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 356  Q
    ||||| |||||||||||||||||||| || ||| ||| |||||||||||||||| |  |||| ||| | ||| ||| |||||||||||||||||||||||    
T  26330371 ataacatcattgtgtcatcttctctaccttttatctcatttatttgatagttcagaatcaagtatattaatctaatctcttcaagtatcaaattcatttt 26330272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 16976157 - 16976203
Alignment:
Q  266 ttgtgtcatcttctctatctcttaactcctttatttgatagttcaaa 312  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  16976157 ttgtgtcatcttctctatctcttaactcttttatttgatagttcaaa 16976203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 11993799 - 11993898
Alignment:
Q  93 gattgtgtggtagctaaagtttgaagagcttgtccaaaacttgta---tcaggtagaccaaaaacgaagagaaaatgtgcaacatctgagaggatatctc 189  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||   |||| ||||||||||| ||||||||| ||| |   |||||||||| ||||||    
T  11993799 gattgtgtggtagttaaagattgaagagcctgtccaaaacttgtaaggtcagatagaccaaaaa-gaagagaaagtgttcggaatctgagagggtatctc 11993897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 25427468 - 25427418
Alignment:
Q  268 gtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaag 318  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  25427468 gtgtcatcttgtctatcccttaactcctttatttgatagttcaaaagcaag 25427418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 26645954 - 26646033
Alignment:
Q  59 aagcttcactaatcctttttagattataatagtggattgtgtggtagctaaagtttgaagagcttgtccaaaacttgtat 138  Q
    |||||||||||||| | |||   ||||||  |||||||||||||||| |||||| |||||||| |||| |||||||||||    
T  26645954 aagcttcactaatcttctttgagttataaaggtggattgtgtggtagttaaagtctgaagagcatgtctaaaacttgtat 26646033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 17622190 - 17622254
Alignment:
Q  245 aggtgaactaagataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttca 310  Q
    |||||||||| ||||| ||  ||||||||||||||||| |||||||||| |||||| |||||||||    
T  17622190 aggtgaactatgataa-ttgtttgtgtcatcttctctacctcttaactcttttattcgatagttca 17622254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 20185814 - 20185860
Alignment:
Q  5 aaattgatcattgt--aagatcaagatcacaaaacaattgtgtaatt 49  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||    
T  20185814 aaattgataattgttaaagatcaagatcacaaaacaattgtgtaatt 20185860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 26330541 - 26330494
Alignment:
Q  90 gtggattgtgtggtagctaaagtttgaagagcttgtccaaaacttgta 137  Q
    |||||||||||||| | |||||| ||||||| ||||||||||||||||    
T  26330541 gtggattgtgtggttgttaaagtctgaagaggttgtccaaaacttgta 26330494  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 27776100 - 27776180
Alignment:
Q  1 gatcaaattgatcattgtaagatcaagatcacaaaacaa--ttgtgtaattagttgtaagaagcttcactaatcctttttag 80  Q
    |||||||||||||||||| |||||| || ||||||| ||  ||| ||| ||||||||||| ||||||| | |||||||||||    
T  27776100 gatcaaattgatcattgttagatcagga-cacaaaataaaattgagtagttagttgtaaggagcttcatttatcctttttag 27776180  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 11993973 - 11994017
Alignment:
Q  267 tgtgtcatcttctctatctcttaactcctttatttgatagttcaaa 312  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||    
T  11993973 tgtgtcattttctctatcccttaactcc-ttatttgatagttcaaa 11994017  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 31900607 - 31900539
Alignment:
Q  70 atcctttttagattataatagtggattgtgtggtagct-aaagtttgaagagcttgtccaaaacttgta 137  Q
    ||||| ||||| ||||||  ||||||| |||||||||| ||||| ||||| | ||||||||||||||||    
T  31900607 atcctctttaggttataaatgtggattttgtggtagcttaaagtatgaagtggttgtccaaaacttgta 31900539  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 356
Target Start/End: Complemental strand, 23948060 - 23947961
Alignment:
Q  257 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 356  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||| |||||| |||||   | ||||||||||| |||  ||||||||||||||||    
T  23948060 ataacttcattgtgtcatcttctctatccctgaacttctttatttgataattcaaaagcaagttcaatcatccaatttgttcttgtatcaaattcatttt 23947961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23948313 - 23948181
Alignment:
Q  1 gatcaaattgatcattgtaagatcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgt 100  Q
    |||||||||||||||||| |||||||||||| |||||||||||| ||| || ||||  ||||| ||||||| |  |||||| ||||| ||||||||  ||    
T  23948313 gatcaaattgatcattgttagatcaagatcagaaaacaattgtgcaatcag-tgta--aagctccactaattcactttagagtataaaagtggatttagt 23948217  T
Q  101 ggtagctaaagtttgaagagcttgtccaaaacttgta 137  Q
    |||||||| ||| ||||||  |||||| |||||||||    
T  23948216 ggtagctagagtctgaagaagttgtcc-aaacttgta 23948181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 23905658 - 23905772
Alignment:
Q  18 taagatcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgtggtagctaaagtttgaa 117  Q
    ||||| ||||||||||||| |||| |||||| |||| |||  ||||||||||||||| ||||   |||||    |||||||||||||| |||||| ||||    
T  23905658 taagagcaagatcacaaaaaaattatgtaatcagttctaa--agcttcactaatcctctttaaggtataaagacggattgtgtggtagttaaagtctgaa 23905755  T
Q  118 gagcttgtccaaaactt 134  Q
    ||| |||||||||||||    
T  23905756 gagattgtccaaaactt 23905772  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 18603225 - 18603138
Alignment:
Q  269 tgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 356  Q
    ||||||||||| |||| |||||||| |||||||||||||||| | ||||||| | ||||| ||| | ||   ||||||||||||||||    
T  18603225 tgtcatcttctttatcccttaactcatttatttgatagttcagaagcaagcaaaatcatctaatcttttattgtatcaaattcatttt 18603138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 23905896 - 23905951
Alignment:
Q  257 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaa 312  Q
    |||||||  ||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  23905896 ataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaa 23905951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 264356 - 264267
Alignment:
Q  18 taagatcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgtggtagctaa 109  Q
    |||||||||||||||||||||||||||| | ||||||||  || ||||||||||||| ||||| ||||||  | ||||||||||||||||||    
T  264356 taagatcaagatcacaaaacaattgtgttaatagttgta--aaacttcactaatcctctttaggttataaatgcggattgtgtggtagctaa 264267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 264174 - 264067
Alignment:
Q  200 attggataatctcgcagtattgtgtggattggactagaacggttaaggtgaactaagataacttcattgtgtcatcttctctatctcttaactcctttat 299  Q
    |||||| |||||| |||| | ||| ||||||||||||  | |||||||||||| | ||||||||| | || |||| |||| ||||  |||||| ||| ||    
T  264174 attggaaaatctcacagtct-gtggggattggactagcccagttaaggtgaaccatgataacttcttcgtttcatgttctttatccattaacttcttcat 264076  T
Q  300 ttgatagtt 308  Q
    |||||||||    
T  264075 ttgatagtt 264067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 19993961 - 19993810
Alignment:
Q  19 aagatcaagatcacaa-aacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgtggtagctaaagtttgaa 117  Q
    |||||||||||||||| ||||||||| |||| || |||||  ||||||||||||||| |||||  ||| |  ||||||||||||||||||||| | ||||    
T  19993961 aagatcaagatcacaagaacaattgtataataagatgtaa--agcttcactaatcctctttagggtattaaggtggattgtgtggtagctaaaatctgaa 19993864  T
Q  118 gagcttgtccaaaacttgta---tcaggtagaccaaaaacgaagagaaaatgtg 168  Q
    ||| ||||| ||| ||||||   | |||||||||| ||| ||||||||| ||||    
T  19993863 gaggttgtctaaatcttgtattgttaggtagaccagaaaagaagagaaagtgtg 19993810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 20662381 - 20662252
Alignment:
Q  5 aaattgatcattgt--aagatcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgtgg 102  Q
    |||||||||||| |  |||||||||||||||||||||||||||||| | |  || |||||||||||||| || ||||||||||| | || || | |||||    
T  20662381 aaattgatcattcttaaagatcaagatcacaaaacaattgtgtaatcaat--tatgaagcttcactaatactctttagattatagtggttgactatgtgg 20662284  T
Q  103 tagctaaagtttgaagagcttgtccaaaacttg 135  Q
    |||||||||| | ||||| ||||| ||||||||    
T  20662283 tagctaaagtctaaagag-ttgtcaaaaacttg 20662252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 19993708 - 19993622
Alignment:
Q  270 gtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 356  Q
    ||||||||||||||| |||||||  | ||||||| |||||| | ||||||| | ||| ||||| || ||  ||||||||||||||||    
T  19993708 gtcatcttctctatcccttaacttttatatttgacagttcataagcaagcacattcaaccaatctcatcttgtatcaaattcatttt 19993622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 18240699 - 18240809
Alignment:
Q  200 attggataatctcgcagtattgtgtggattggactagaacggttaaggtgaactaagataacttcattgtgtcatcttctctatctcttaactcctttat 299  Q
    ||||||||||||| ||||  |||| |||||||||||  ||| ||| ||| ||||| |||||| ||||||||||||||||||||||  ||| ||| |||||    
T  18240699 attggataatctcacagt--tgtgaggattggactaacacgattagggtaaactaggataacatcattgtgtcatcttctctatccattatctcatttat 18240796  T
Q  300 ttgatagttcaaa 312  Q
    ||| |||||||||    
T  18240797 ttggtagttcaaa 18240809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 33699967 - 33699845
Alignment:
Q  14 attgtaagatcaagatcacaa-aacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgtggtagctaaagt 112  Q
    ||||||||||||||||||||| |||||||| || || | ||||||  ||||||||||||||| |||||  |||||  ||||||||||| | |||||||||    
T  33699967 attgtaagatcaagatcacaagaacaattgagtcatcaattgtaa--agcttcactaatcctctttagggtataaaggtggattgtgtagcagctaaagt 33699870  T
Q  113 ttgaagagcttgtccaaaacttgta 137  Q
     |||||||  || |||||| |||||    
T  33699869 ctgaagaggctgcccaaaatttgta 33699845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 8321695 - 8321513
Alignment:
Q  1 gatcaaattgatcattg-taagatcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtg 99  Q
    ||||||||||||||||| |||||  | |||||||||| |||  |||||| ||||||||  || |||| ||||  | ||||| | ||||  |||||||||     
T  8321695 gatcaaattgatcattgataagactatgatcacaaaataatcatgtaatgagttgtaa--agtttcattaattatctttaggt-ataaaggtggattgta 8321599  T
Q  100 tggtagctaaagtttgaagagcttgtccaaaacttgta---tcaggtagaccaaaaacgaagagaaaatgtgcaacatctgagagg 182  Q
    || |||||||||| | ||||| ||||||||||||||||   ||| | |||||| ||| ||||||||| ||||||||||||||||||    
T  8321598 tgatagctaaagtctaaagaggttgtccaaaacttgtaaggtcaaggagaccagaaatgaagagaaagtgtgcaacatctgagagg 8321513  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 25229964 - 25230031
Alignment:
Q  242 ttaaggtgaactaagataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttca 310  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||    
T  25229964 ttaagatgaaccatgataacttctttgtgtcatcttctctatc-cctaactcctttatttgctagttca 25230031  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 25229722 - 25229914
Alignment:
Q  1 gatcaaattgatcattgt-aagatcaagatcacaaaacaa-ttgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgt 98  Q
    ||||||| |||||||| | ||||||||||||| ||||||| || |||||| | ||||||  || ||||||||| || |||||  ||| |  ||||||| |    
T  25229722 gatcaaaatgatcattcttaagatcaagatcaaaaaacaaattttgtaatcaattgtaa--agtttcactaattctctttaggatatgaaggtggattat 25229819  T
Q  99 gtggtagctaaagtttgaagagcttgtccaaaacttgta---tcaggtagaccaaaaacgaagagaaaatgtgcaacatctgagaggatatctca 190  Q
    |||||||||||||  ||||||| || || | ||||||||   |||| ||||||| ||| ||||| ||| ||| ||  |||||||||| |||||||    
T  25229820 gtggtagctaaagcatgaagaggttatctagaacttgtaaggtcagctagaccagaaaagaagacaaagtgttcacaatctgagagggtatctca 25229914  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 7171424 - 7171341
Alignment:
Q  19 aagatcaagatcacaa-aacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgtggt 103  Q
    |||||||| ||||||| ||||||||||||||| ||||||  |||||||| ||||||  ||| || |||||  ||||||||||||||    
T  7171424 aagatcaaaatcacaataacaattgtgtaatttgttgta--aagcttcagtaatcccctttcgaatataaaggtggattgtgtggt 7171341  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 11728578 - 11728477
Alignment:
Q  2 atcaaattgatcattgtaaga-tcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtgt 100  Q
    ||||||||||||||||| | | ||| |||||||||||||||||||||  |||||||  |||||||| ||||||| |||||  |||||  |||||||||||    
T  11728578 atcaaattgatcattgttataatcacgatcacaaaacaattgtgtaaacagttgta--aagcttcattaatcctctttaggatataaaggtggattgtgt 11728481  T
Q  101 ggta 104  Q
    ||||    
T  11728480 ggta 11728477  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 27223331 - 27223485
Alignment:
Q  1 gatcaaattgatcattgt-aagatcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatcctttttagattataatagtggattgtg 99  Q
    |||||||||||||||||| || ||| |||||| |||  ||||||||| | ||||| ||  ||||||||||||| | ||||   |||||  ||||||||||    
T  27223331 gatcaaattgatcattgttaaaatctagatcataaaggaattgtgtattcagttgcaa--agcttcactaatcttatttacgctataaaggtggattgtg 27223428  T
Q  100 tggtagctaaagtttgaagagcttgtccaaaacttgta---tcaggtagaccaaaaa 153  Q
    ||||| ||||||| | ||||| ||||| ||||||||||   ||||||||||| ||||    
T  27223429 tggtatctaaagtctaaagaggttgtctaaaacttgtacggtcaggtagaccgaaaa 27223485  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 5486674 - 5486787
Alignment:
Q  5 aaattgatcattgtaagatcaagatcacaaaacaattgtgtaattagttgtaagaagcttcactaatc--ctttttagattataatagtggattgtgtgg 102  Q
    |||||||||||||| ||||||||||||||||||||||| |||   | |||||  |||||||| |||||  ||||||||| |||||  ||||||||||  |    
T  5486674 aaattgatcattgttagatcaagatcacaaaacaattgcgta--cacttgta--aagcttcaataatcttctttttagagtataaaggtggattgtgccg 5486769  T
Q  103 tagctaaagtttgaagag 120  Q
    ||| |||||| |||||||    
T  5486770 tagttaaagtctgaagag 5486787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 27223581 - 27223662
Alignment:
Q  257 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttc 338  Q
    |||||||  |||||||||||||| | || ||| ||||||||||||||||||||| | | || || | |||||||||||||||    
T  27223581 ataacttgtttgtgtcatcttctttgtcccttcactcctttatttgatagttcataagaaaacacaatcatccaatttcttc 27223662  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 5487564 - 5487671
Alignment:
Q  248 tgaactaagataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaa 347  Q
    ||||| |||||||||||| ||| |||||||||||| || ||| || |||||||| ||| | || | ||||||| | |||  ||||||||||  |||||||    
T  5487564 tgaaccaagataacttcaatgtatcatcttctctagcttttatct-ctttattttataatccagaagcaagcacaatcactcaatttcttcttgtatcaa 5487662  T
Q  348 attcatttt 356  Q
    |||||||||    
T  5487663 attcatttt 5487671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 8253069 - 8253120
Alignment:
Q  5 aaattgatcattgtaagatcaagatcacaaaacaattgtgtaattagttgtaa 57  Q
    |||||||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  8253069 aaattgatcattgttagatcaagatca-taaacaattgtgtaatcagttgtaa 8253120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 7776196 - 7776149
Alignment:
Q  10 gatcattgtaagatcaagatcacaaaacaattgtgtaattagttgtaa 57  Q
    ||||||||| ||||||||||||||||| | ||||||||| ||||||||    
T  7776196 gatcattgttagatcaagatcacaaaaaagttgtgtaatcagttgtaa 7776149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 15963078 - 15962990
Alignment:
Q  266 ttgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcattt 355  Q
    |||| ||||||||||| || ||| | || ||||||||||||| || | ||||||| | ||||||||| |||||  |||||||||||||||    
T  15963078 ttgtatcatcttctct-tcccttgaatcttttatttgatagtgcataagcaagcacattcatccaatctcttcttgtatcaaattcattt 15962990  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 356
Target Start/End: Original strand, 17748244 - 17748354
Alignment:
Q  246 ggtgaactaagataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatc 345  Q
    ||||||| | ||||| ||| |||||| | ||||||||||||||||||| ||||||||||  |||| | | || || | ||||||||| |||||  |||||    
T  17748244 ggtgaaccatgataaattcgttgtgttaacttctctatctcttaactcatttatttgatctttcataagaaaacacaatcatccaatctcttcttgtatc 17748343  T
Q  346 aaattcatttt 356  Q
    |||||||||||    
T  17748344 aaattcatttt 17748354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 260601 - 260737
Alignment:
Q  59 aagcttcactaatcctttttagattataatagtggattgtgtggtagctaaagtttgaagagcttgtccaaaacttgta---tcaggtagaccaaaaacg 155  Q
    ||||||||||||| || ||||   |||||  ||||||| ||||||||||||||| ||||||  | ||   |||||||||   | |||||||||| ||| |    
T  260601 aagcttcactaattctctttatggtataaaggtggattatgtggtagctaaagtatgaagatgtagtgttaaacttgtaaggttaggtagaccataaaag 260700  T
Q  156 aagagaaaatgtgcaacatctgagaggatatctcata 192  Q
    ||||||||||||| |  |||||||||| |||||||||    
T  260701 aagagaaaatgtgaagaatctgagagggtatctcata 260737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 655320 - 655184
Alignment:
Q  59 aagcttcactaatcctttttagattataatagtggattgtgtggtagctaaagtttgaagagcttgtccaaaacttgta---tcaggtagaccaaaaacg 155  Q
    ||||||||||||| || ||||   |||||  ||||||| ||||||||||||||| ||||||  | ||   |||||||||   | |||||||||| ||| |    
T  655320 aagcttcactaattctctttatggtataaaggtggattatgtggtagctaaagtatgaagatgtagtgttaaacttgtaaggttaggtagaccataaaag 655221  T
Q  156 aagagaaaatgtgcaacatctgagaggatatctcata 192  Q
    ||||||||||||| |  |||||||||| |||||||||    
T  655220 aagagaaaatgtgaagaatctgagagggtatctcata 655184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 841055 - 840919
Alignment:
Q  59 aagcttcactaatcctttttagattataatagtggattgtgtggtagctaaagtttgaagagcttgtccaaaacttgta---tcaggtagaccaaaaacg 155  Q
    ||||||||||||| || ||||   |||||  ||||||| ||||||||||||||| ||||||  | ||   |||||||||   | |||||||||| ||| |    
T  841055 aagcttcactaattctctttatggtataaaggtggattatgtggtagctaaagtatgaagatgtagtgttaaacttgtaaggttaggtagaccataaaag 840956  T
Q  156 aagagaaaatgtgcaacatctgagaggatatctcata 192  Q
    ||||||||||||| |  |||||||||| |||||||||    
T  840955 aagagaaaatgtgaagaatctgagagggtatctcata 840919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 21806674 - 21806720
Alignment:
Q  90 gtggattgtgtggtagctaaagtttgaagagcttgtccaaaacttgt 136  Q
    |||||| ||||||||||||||||||||||||  ||||||||||||||    
T  21806674 gtggatcgtgtggtagctaaagtttgaagagactgtccaaaacttgt 21806720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15487638 - 15487683
Alignment:
Q  1 gatcaaattgatcattgt-aagatcaagatcacaaaacaattgtgt 45  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  15487638 gatcaaattgatcattgttaagatcaagatcacaaaaccattgtgt 15487683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 7483 - 7535
Alignment:
Q  256 gataacttcattgtgtcatcttctctatctcttaactcctttatttgatagtt 308  Q
    |||||| |||||||||||||||||||||||| ||  || ||||||| ||||||    
T  7483 gataacatcattgtgtcatcttctctatctcctatatcttttattttatagtt 7535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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