View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_high_18 (Length: 247)
Name: NF13831_high_18
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 39511254 - 39511456
Alignment:
| Q |
28 |
ccaaaacataacgcaaaattcaaacacgaatttagttttgaagttttagtcataagaaagcaagaattataactacaacgcaaatctaaacacaaatttg |
127 |
Q |
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| T |
39511254 |
ccaaaatagaacgcaaaattcaaacacaaatttaattt-gaagttttagtcataaaaaagcaagaattataactacaacgcaaatctaaacacaaatttg |
39511352 |
T |
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| Q |
128 |
gaatccctactataagaagatcttgtattcatgtagtcgagacatcaataatcgattttaatcaagaggcgtttttaactataagagccggtccatctga |
227 |
Q |
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| T |
39511353 |
aaatccctactataagaagatcttgtattcatgtagtcgagacatcaataatcgattttaatcaagaggcatttttaactat-atagccggtccatctga |
39511451 |
T |
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| Q |
228 |
acaca |
232 |
Q |
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||||| |
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| T |
39511452 |
acaca |
39511456 |
T |
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