View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13831_high_21 (Length: 228)

Name: NF13831_high_21

Description: NF13831

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13831_high_21

[»] chr5 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 187; E-Value: 1e-101

Query Start/End: Original strand, 24 - 210

Target Start/End: Original strand, 34387491 - 34387677

Alignment:

Q	24	gaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgttaatttgtg	123	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34387491	gaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgttaatttgtg	34387590	T

Q	124	gtgattcacaaggcaattcatgtcgacaaacgggacaagaattttgaattgcaagccatggaagtatgcattcattatggtatatgt	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34387591	gtgattcacaaggcaattcatgtcgacaaacgggacaagaattttgaattgcaagccatggaagtatgcattcattatggtatatgt	34387677	T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 26 - 79

Target Start/End: Original strand, 41697403 - 41697456

Alignment:

Q	26	aaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaac	79	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|
T	41697403	aaatcttccaacagcaaatccacctcccggtaacctccatattgtcaatccaac	41697456	T

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