View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13831_high_22 (Length: 204)

Name: NF13831_high_22
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13831_high_22
NF13831_high_22
[»] chr7 (8 HSPs)
chr7 (23-106)||(4303136-4303219)
chr7 (28-106)||(11001101-11001179)
chr7 (23-94)||(1369543-1369614)
chr7 (40-103)||(1786420-1786483)
chr7 (23-106)||(8915448-8915530)
chr7 (42-106)||(1217487-1217550)
chr7 (30-106)||(13883010-13883085)
chr7 (29-103)||(11228455-11228528)
[»] chr1 (7 HSPs)
chr1 (23-103)||(10926923-10927003)
chr1 (38-103)||(8966030-8966095)
chr1 (23-98)||(13441924-13441997)
chr1 (31-106)||(10927839-10927914)
chr1 (28-106)||(23988957-23989035)
chr1 (29-103)||(40805592-40805666)
chr1 (38-106)||(31522576-31522644)
[»] chr2 (9 HSPs)
chr2 (23-106)||(31636014-31636097)
chr2 (28-101)||(280294-280367)
chr2 (37-106)||(27952652-27952721)
chr2 (44-104)||(2165624-2165684)
chr2 (23-106)||(35681933-35682016)
chr2 (23-106)||(33053148-33053230)
chr2 (23-105)||(32162243-32162325)
chr2 (48-105)||(23457389-23457446)
chr2 (43-106)||(22011131-22011194)
[»] chr8 (5 HSPs)
chr8 (23-106)||(23573263-23573346)
chr8 (44-106)||(22922177-22922239)
chr8 (23-106)||(2688900-2688981)
chr8 (33-104)||(22512377-22512448)
chr8 (48-106)||(26377776-26377834)
[»] chr6 (14 HSPs)
chr6 (23-106)||(18203164-18203246)
chr6 (23-106)||(34374062-34374145)
chr6 (44-106)||(3541947-3542009)
chr6 (44-106)||(30049617-30049679)
chr6 (44-106)||(30051904-30051966)
chr6 (30-106)||(22873546-22873622)
chr6 (30-106)||(22888989-22889065)
chr6 (23-106)||(12881752-12881834)
chr6 (33-106)||(22910535-22910608)
chr6 (47-106)||(12778684-12778743)
chr6 (45-95)||(18720019-18720069)
chr6 (46-106)||(32361109-32361169)
chr6 (43-98)||(8047663-8047718)
chr6 (76-104)||(11194398-11194426)
[»] chr5 (3 HSPs)
chr5 (23-98)||(21845225-21845300)
chr5 (23-106)||(18252147-18252230)
chr5 (44-99)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (23-98)||(22716341-22716416)
chr4 (23-98)||(22988801-22988876)
chr4 (33-106)||(6659656-6659728)
chr4 (44-106)||(13085421-13085483)
chr4 (23-104)||(7635017-7635098)
chr4 (23-106)||(10494651-10494734)
chr4 (28-98)||(9260297-9260367)
[»] scaffold0110 (1 HSPs)
scaffold0110 (44-106)||(45943-46005)
[»] chr3 (4 HSPs)
chr3 (37-105)||(365879-365947)
chr3 (56-106)||(3064066-3064116)
chr3 (45-106)||(8536658-8536719)
chr3 (58-103)||(24516698-24516743)
[»] scaffold0054 (3 HSPs)
scaffold0054 (45-104)||(49063-49122)
scaffold0054 (33-106)||(10388-10461)
scaffold0054 (23-104)||(37443-37523)
[»] scaffold0024 (1 HSPs)
scaffold0024 (42-106)||(145481-145544)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 4303136 - 4303219
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303136 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 4303219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 11001179 - 11001101
Alignment:
Q  28 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  11001179 acatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggaggg 11001101  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 1369543 - 1369614
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagact 94  Q
    |||| |||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  1369543 agtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagact 1369614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 1786420 - 1786483
Alignment:
Q  40 agctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 103  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  1786420 agctctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtagga 1786483  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 8915530 - 8915448
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| |||||||||||| ||| ||||| | |||||||| ||||| || |||||||||||| |||||||||||||||||||||||    
T  8915530 agtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggaggg 8915448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 1217550 - 1217487
Alignment:
Q  42 ctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  1217550 ctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgcaggaggg 1217487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 13883085 - 13883010
Alignment:
Q  30 atgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||| ||| |||||||| | |||||||||||||| |||||||||| ||||||||| |||||||||| |||||||    
T  13883085 atgcatgagaatctctttattagaatgagaactcggg-tcgagttctttagaggtggacgagactgatgcaggaggg 13883010  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 11228455 - 11228528
Alignment:
Q  29 catgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 103  Q
    ||||||||||||| ||||||| | ||||||||||||||  | ||||||| ||||| |||| ||||||||||||||    
T  11228455 catgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtagga 11228528  T

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Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 10926923 - 10927003
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 103  Q
    |||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10926923 agtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagga 10927003  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 8966095 - 8966030
Alignment:
Q  38 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 103  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8966095 gaagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtagga 8966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 13441997 - 13441924
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 98  Q
    |||| |||||||||||||||||||||||| ||||||||||   |||||| ||||||||||||||||||||||||||    
T  13441997 agtcaacatgcatgggaagctctttatcagaatgagaact--tgatcgaattcttcagaggtggaggagactgatg 13441924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 10927839 - 10927914
Alignment:
Q  31 tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||| ||| |||||||| | |||||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  10927839 tgcatgagaaactctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggaggg 10927914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 23988957 - 23989035
Alignment:
Q  28 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||| ||||||||||||| ||||| ||||||||  | |||||||||||||||||| |||||||| |||||||||||    
T  23988957 acatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgtaggaggg 23989035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 40805592 - 40805666
Alignment:
Q  29 catgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 103  Q
    |||||||| ||| ||| |||||| ||  |||||||||| |||| ||||| | |||||||||||||||||||||||    
T  40805592 catgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtagga 40805666  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 31522576 - 31522644
Alignment:
Q  38 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||| |||||| || |||||||||   |||||||||||||||||||| | | ||||||||||||||    
T  31522576 gaagctcattatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggaggg 31522644  T

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Target: chr2 (Bit Score: 64; Significance: 3e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 31636014 - 31636097
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| ||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  31636014 agtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggaggagactgatgtaggaggg 31636097  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 280367 - 280294
Alignment:
Q  28 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag 101  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  280367 acatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtag 280294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 27952721 - 27952652
Alignment:
Q  37 ggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27952721 ggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 27952652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 2165624 - 2165684
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 104  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2165624 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 2165684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 35681933 - 35682016
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| |||||||| | ||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  35681933 agtcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggaggg 35682016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 33053148 - 33053230
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||||||| ||| |||||||||||| | ||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  33053148 agtcgacatgaatgagaagctctttattagaataagaac-cggggtcgagttcttcagaggtggaggagactgatgtagaaggg 33053230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 32162325 - 32162243
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 105  Q
    |||| |||||||||||||||||||||||| |||||||||||  | | ||||| ||||||| ||||||||||| ||||| ||||    
T  32162325 agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgtaagagg 32162243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 23457389 - 23457446
Alignment:
Q  48 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 105  Q
    |||| ||||||||||||||   |||||||||||||||||||| |||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtaggagg 23457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 22011131 - 22011194
Alignment:
Q  43 tctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||| | ||||||||||| || |||||||||| |||||||||||||| ||||| |||||||    
T  22011131 tctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggaggg 22011194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 23573263 - 23573346
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||| ||||    
T  23573263 agtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaaggg 23573346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 22922239 - 22922177
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22922239 ctttatgaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 22922177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 2688900 - 2688981
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| ||||||||||||| ||||  || | |||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  2688900 agtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggaggg 2688981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 22512448 - 22512377
Alignment:
Q  33 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 104  Q
    |||||||||||  |||||| ||| |||||||||| |||||||||| |||||||||||||||||||| |||||    
T  22512448 catgggaagcttcttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggag 22512377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 26377776 - 26377834
Alignment:
Q  48 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggaggg 26377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 18203164 - 18203246
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| |||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18203164 agtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggtggaggagactgatgtaggaggg 18203246  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 34374145 - 34374062
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||| |||||    
T  34374145 agtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagaggg 34374062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 3541947 - 3542009
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3541947 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 3542009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 30049617 - 30049679
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30049617 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30049679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 30051904 - 30051966
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30051904 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30051966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 22873546 - 22873622
Alignment:
Q  30 atgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||||||||||||||||||| |||||||||| |||||||| ||| | ||||||||| ||||||||||||||||||    
T  22873546 atgcatgggaagctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtaggaggg 22873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 22888989 - 22889065
Alignment:
Q  30 atgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| ||||||||||||||||||    
T  22888989 atgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggaggg 22889065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 12881752 - 12881834
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| |||||||||||||| |||| |||  ||||||| |||||| |||||||||||  ||||||||||||||||||||||||||    
T  12881752 agtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtggaggagactgatgtaggaggg 12881834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 22910535 - 22910608
Alignment:
Q  33 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| ||||||||||||||||||    
T  22910535 catgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggaggg 22910608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 12778743 - 12778684
Alignment:
Q  47 tatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||| |||||||| | ||| || |||||||||||||||||||||||||||||| |||||    
T  12778743 tatcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagaggg 12778684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 18720019 - 18720069
Alignment:
Q  45 tttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactg 95  Q
    ||||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  18720019 tttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 32361109 - 32361169
Alignment:
Q  46 ttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||| |||||||||||| | ||||||| || |||||||||| ||||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggaggg 32361169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 8047718 - 8047663
Alignment:
Q  43 tctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 98  Q
    ||||||| | ||| |||||||||| || ||||||||||||||||||||||| ||||    
T  8047718 tctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatg 8047663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 11194398 - 11194426
Alignment:
Q  76 ttcagaggtggaggagactgatgtaggag 104  Q
    |||||||||||||||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggag 11194426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 21845300 - 21845225
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 98  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||    
T  21845300 agtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaacagactgatg 21845225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 18252147 - 18252230
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||| |||||||||| ||||| ||||||| |||||||||||||| || |||||||||||||| |||||| |||||| |||||||    
T  18252147 agtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggaggg 18252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 19677684 - 19677629
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgt 99  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19677684 ctttataaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgt 19677629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 22716341 - 22716416
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 98  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22716341 agtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 22988876 - 22988801
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 98  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22988876 agtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22988801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 6659728 - 6659656
Alignment:
Q  33 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||||||||||    
T  6659728 catgggaagctctttatcaagatgagaatttggg-tcgagttcttcagaggtagaggagactgatgtaggaggg 6659656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 13085483 - 13085421
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  13085483 ctttatcaagatgagaactcggggtcgagttcttcagagatggaagagactgatgtaggaggg 13085421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 7635017 - 7635098
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 104  Q
    |||| ||||||||||| |||| ||||| | |||||||| | ||| ||||||||||||||| |||||||||||||||| ||||    
T  7635017 agtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggag 7635098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 10494651 - 10494734
Alignment:
Q  23 agtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||||||||||||||| |||||||  || |||||| | | |||||||||||||| || ||| ||||||||||| |||||    
T  10494651 agtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgaggg 10494734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 9260297 - 9260367
Alignment:
Q  28 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 98  Q
    |||| |||| |||| ||||||||||||| |||||||||| |||||||||| ||| || ||||||| |||||    
T  9260297 acatccatgagaagttctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatg 9260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 46005 - 45943
Alignment:
Q  44 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46005 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 45943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 365947 - 365879
Alignment:
Q  37 ggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 105  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||| ||||||    
T  365947 ggaagctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgcaggagg 365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 3064116 - 3064066
Alignment:
Q  56 gagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  3064116 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 3064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 8536719 - 8536658
Alignment:
Q  45 tttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||| ||| |||||||||  |||||||||| ||||||||| ||| ||||||||||||||    
T  8536719 tttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggaggg 8536658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  58 gaactcgggatcgagttcttcagaggtggaggagactgatgtagga 103  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 49063 - 49122
Alignment:
Q  45 tttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 104  Q
    ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||    
T  49063 tttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgtaggag 49122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 10388 - 10461
Alignment:
Q  33 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| ||||||||||||||||||    
T  10388 catgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggaggg 10461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 37443 - 37523
Alignment:
Q  23 agtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 104  Q
    |||| |||||||||| ||||||||| |||| ||| |||| | ||| |||||||||||||||||||||||||||||||||||||    
T  37443 agtcaacatgcatgg-aagctcttttatcagaataagaatttggg-tcgagttcttcagaggtggaggagactgatgtaggag 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 145481 - 145544
Alignment:
Q  42 ctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 106  Q
    |||||||||| ||| | |||||||| || |||||||| |||||||||||||||||||||||||||    
T  145481 ctctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggaggg 145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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