View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_high_6 (Length: 515)
Name: NF13831_high_6
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 497
Target Start/End: Complemental strand, 39511195 - 39510709
Alignment:
| Q |
29 |
ttgatcgttgcatattcgaagggactcacaccatggtttcatatgtaagctcacgcttatgatgcatgtgggttaagagggattcatacct----gttcc |
124 |
Q |
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| T |
39511195 |
ttgatggttgcatgttcgaagggattcac--catggtttcatatgtaagctcgcgcttatgacgcatgtgggttgagagggattcatacctacttgttcc |
39511098 |
T |
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| Q |
125 |
aaatgtgtgcgtagagttttcttatttnnnnnnnnttcatttttagagaagagaattttggagagctaagtatatattt----------------aaggg |
208 |
Q |
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||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39511097 |
aaatgtgtgcgtagagttttcttatctaaaaaat-ttaatttttagagaagagaattttggagagctaagtatatattttagcatatatatatttaaggg |
39510999 |
T |
|
| Q |
209 |
aaaaagaaaagttatttgtaaaaggtctaacaca--aaaaatcacgaattgaaaataatctttgaatgtaatatttagtttaaattttttctgactggtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39510998 |
aaaaagaaaagttatttgtaaaaggtctaacacacaaaaaatcacgaattgaaaataatctttgaatgtaatatttagtttaaattttttctgactggtt |
39510899 |
T |
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| Q |
307 |
tatttcaaaaatataaaatcggttgtccagatgtatttgtagtaaattgtgctttattttcatcatgctatacaacaatttgcgtatgtgaggttttnnn |
406 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39510898 |
tatttcaaaaatataaaatcggttgtccaggtgtatttgtagtaaattgtgctttattttcatcatgctatacaacaatttgcgtatgtgaagtttt-aa |
39510800 |
T |
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| Q |
407 |
nnnnttaaaagaatgatatgataaatgatcatatatcattttttattttaacaaaagattatcatatatcatctccataacaccttaattt |
497 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
39510799 |
aaaattaaaagaatgacatgataaatgatcatatatcattttttattttaacaaaagatgatcgtatatcatctccataacaccttaattt |
39510709 |
T |
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