View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_low_10 (Length: 499)
Name: NF13831_low_10
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 21 - 490
Target Start/End: Complemental strand, 36604402 - 36603932
Alignment:
| Q |
21 |
ctagatttgttctcggttgaatannnnnnn-gctagatcatttagtttgcttgctgttggtatttgttccactcttcttgttgaatcattaacaaaaata |
119 |
Q |
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| T |
36604402 |
ctagatttgttctcggttgaatattttttttgctagatcatttagtttgcttgctgttggtatttgttccactcttcttgttgaatcattaacaaaaata |
36604303 |
T |
|
| Q |
120 |
aattttgacattttcaactgtgcatctaaacacatgctaaatctgttgttggtttgattgtaggttcttggtttggagaaaacggcctctcaacaagaaa |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604302 |
aattttgacattttcaactgtgcatttaaacacatgctaaatctgttgttggtttgattgtaggttcttggtttggagaaaacggcctctcaacaagaaa |
36604203 |
T |
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| Q |
220 |
taaagaaggcctattacaaattggcattgcggctccatccggataaaaatcctggtgatgaggtgattctttaaggccgcttgttatgctgtggattgcg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36604202 |
taaagaaggcctattacaaattggcattgcggctccatccggataaaaatcctggtgatgaggtgattctttaaggctgcttgttatgctgtggattgcg |
36604103 |
T |
|
| Q |
320 |
tttatactttattatttgtttgttggcttttttgggttggtaattataattacttgtgttcatacaggaggctaaagagaaattccagcaattgcaaaaa |
419 |
Q |
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| T |
36604102 |
tttatattttattatttgtttgttggcttttttgggttggtaattataattacttgtgttcatacaggaggctaaagagaaattccagcaattgcaaaaa |
36604003 |
T |
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| Q |
420 |
gttatttccattcttggagatgaagagaaacgggctctctatgatcagactggttgcattgatgatgatgt |
490 |
Q |
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| T |
36604002 |
gttatttccattcttggagatgaagagaaacgggctctctatgatcagactggttgcattgatgatgatgt |
36603932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 20989668 - 20989771
Alignment:
| Q |
180 |
taggttcttggtttggagaaaacggcctctcaacaagaaataaagaaggcctattacaaattggcattgcggctccatccggataaaaatcctggtgatg |
279 |
Q |
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|||||||||||| ||||||| || || || ||||||||||||||||||| ||| | |||||||| ||| | || ||||| ||||| ||||||||||||| |
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| T |
20989668 |
taggttcttggtgtggagaagacagcaactaaacaagaaataaagaaggcgtatcataaattggcgttgagacttcatcctgataagaatcctggtgatg |
20989767 |
T |
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| Q |
280 |
aggt |
283 |
Q |
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|||| |
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| T |
20989768 |
aggt |
20989771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 20991006 - 20991097
Alignment:
| Q |
384 |
caggaggctaaagagaaattccagcaattgcaaaaagttatttccattcttggagatgaagagaaacgggctctctatgatcagactggttg |
475 |
Q |
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||||| ||||||| || || |||||||||||||| ||||| |||||||| || |||||||| |||||||| || |||||| | |||||||| |
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| T |
20991006 |
caggaagctaaagccaagtttcagcaattgcaaaatgttatctccattctcggggatgaagaaaaacgggcactttatgatgaaactggttg |
20991097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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