View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_low_11 (Length: 452)
Name: NF13831_low_11
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 51756113 - 51755663
Alignment:
| Q |
1 |
cgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttannnnnnnnaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51756113 |
cgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttattttttttaa |
51756014 |
T |
|
| Q |
101 |
cgtctcaacactttccttgcattctctgtcaatgtcatcttcatc------gtcataataatacaaggtaaacttcatctttccctttgtaactccgtca |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756013 |
cgtctcaacactctccttgcattctctgtcaatgtcatcttcatcttcatggtcataataatacaaggtaaacttcatctttccctttgtaactccgtca |
51755914 |
T |
|
| Q |
195 |
tcgtcttcaacaacgctgttactaggaacacgcgctggacaagcatcatcatgacgaggttccaacacttccagacctaggtgaggtttatcggaggaag |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755913 |
tcgtcttcaacaacgctgttactaggaacacgcgctggacaagcataatcatgacgaggttccaacacttccagacctaggtgaggtttatcggaggaag |
51755814 |
T |
|
| Q |
295 |
tgtcgtgggaaggaggtaacaattcaggtttaggggttgggatcctccagaagattacggcgagccatgtccataaatggttgaagaaatcgaagctcaa |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755813 |
tgtcgtgggaaggaggtaacaattcaggtttaggggttgggatcctccagaagatgacggcgagccatgtccataaatggttgaagaaatcgaagctcaa |
51755714 |
T |
|
| Q |
395 |
gtagttgaaagctagagtgtcaagtggagaattttctgacatgttcatctc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
51755713 |
gtagttgaaagctagagtgtcaagtggagaattttctaacatgttcatctc |
51755663 |
T |
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