View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13831_low_17 (Length: 308)

Name: NF13831_low_17
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13831_low_17
NF13831_low_17
[»] chr2 (24 HSPs)
chr2 (12-101)||(6722100-6722189)
chr2 (238-307)||(23748219-23748288)
chr2 (238-307)||(39732780-39732849)
chr2 (238-307)||(9631684-9631753)
chr2 (242-307)||(15224745-15224810)
chr2 (238-308)||(27926677-27926747)
chr2 (238-307)||(16565901-16565970)
chr2 (187-235)||(6721756-6721804)
chr2 (241-307)||(34209591-34209657)
chr2 (242-308)||(36046254-36046320)
chr2 (241-307)||(36347592-36347658)
chr2 (242-307)||(36566901-36566967)
chr2 (238-307)||(42316815-42316884)
chr2 (238-297)||(12541890-12541949)
chr2 (241-296)||(17379939-17379994)
chr2 (259-307)||(1583222-1583270)
chr2 (92-129)||(6721918-6721955)
chr2 (242-307)||(39821797-39821862)
chr2 (256-307)||(7681386-7681437)
chr2 (256-307)||(8426930-8426981)
chr2 (238-301)||(28262500-28262563)
chr2 (240-300)||(19566878-19566939)
chr2 (187-235)||(23748157-23748205)
chr2 (191-235)||(29525867-29525911)
[»] chr6 (21 HSPs)
chr6 (198-308)||(33041543-33041656)
chr6 (238-307)||(21606895-21606964)
chr6 (238-306)||(10348850-10348918)
chr6 (238-307)||(4097563-4097632)
chr6 (242-308)||(665890-665957)
chr6 (241-307)||(31849237-31849303)
chr6 (241-307)||(33236078-33236143)
chr6 (242-307)||(1390447-1390512)
chr6 (242-307)||(10818344-10818409)
chr6 (237-308)||(5585352-5585423)
chr6 (241-308)||(9719081-9719148)
chr6 (241-308)||(9721188-9721255)
chr6 (241-307)||(1300747-1300813)
chr6 (241-307)||(30487357-30487422)
chr6 (238-307)||(34176459-34176528)
chr6 (241-307)||(2900037-2900103)
chr6 (254-307)||(9298625-9298679)
chr6 (192-235)||(34176402-34176445)
chr6 (198-235)||(12811114-12811151)
chr6 (238-307)||(19278085-19278158)
chr6 (187-235)||(30487439-30487487)
[»] chr4 (21 HSPs)
chr4 (238-307)||(45742014-45742083)
chr4 (187-307)||(49735519-49735650)
chr4 (241-307)||(31348372-31348438)
chr4 (238-308)||(54935193-54935263)
chr4 (241-307)||(24565397-24565463)
chr4 (238-307)||(34110929-34110997)
chr4 (242-308)||(27735873-27735939)
chr4 (241-307)||(54320561-54320627)
chr4 (238-301)||(16400924-16400987)
chr4 (261-307)||(6938394-6938440)
chr4 (238-307)||(29798408-29798478)
chr4 (238-307)||(17938158-17938227)
chr4 (241-308)||(2247853-2247920)
chr4 (242-307)||(46007750-46007817)
chr4 (192-273)||(1968444-1968536)
chr4 (198-307)||(41174418-41174538)
chr4 (238-295)||(26167061-26167118)
chr4 (242-306)||(5730882-5730946)
chr4 (238-301)||(45132559-45132621)
chr4 (238-272)||(36151700-36151734)
chr4 (238-307)||(47433760-47433828)
[»] scaffold0171 (1 HSPs)
scaffold0171 (241-308)||(16077-16144)
[»] chr8 (27 HSPs)
chr8 (206-307)||(11575457-11575569)
chr8 (241-307)||(11785653-11785719)
chr8 (238-307)||(1281267-1281336)
chr8 (238-307)||(16653073-16653142)
chr8 (240-307)||(31543123-31543190)
chr8 (241-307)||(9718530-9718596)
chr8 (206-307)||(30479768-30479880)
chr8 (248-308)||(34634277-34634337)
chr8 (238-308)||(6315186-6315256)
chr8 (238-307)||(11033541-11033611)
chr8 (238-307)||(1026900-1026969)
chr8 (240-308)||(30664487-30664555)
chr8 (206-303)||(7503009-7503117)
chr8 (241-306)||(28083869-28083934)
chr8 (242-307)||(37923129-37923194)
chr8 (242-306)||(31738551-31738615)
chr8 (241-307)||(36308970-36309036)
chr8 (238-307)||(29358391-29358459)
chr8 (238-307)||(29690973-29691042)
chr8 (248-307)||(2248586-2248645)
chr8 (241-296)||(37032506-37032561)
chr8 (192-235)||(42650470-42650513)
chr8 (206-235)||(2248533-2248562)
chr8 (242-307)||(7979268-7979333)
chr8 (202-235)||(34633814-34633847)
chr8 (256-308)||(3726913-3726965)
chr8 (238-307)||(13405100-13405173)
[»] chr3 (23 HSPs)
chr3 (241-307)||(220448-220514)
chr3 (238-307)||(24560341-24560410)
chr3 (243-307)||(37102200-37102264)
chr3 (192-307)||(30200139-30200268)
chr3 (241-307)||(41110372-41110438)
chr3 (242-303)||(10748345-10748406)
chr3 (206-305)||(16275758-16275868)
chr3 (241-307)||(9312522-9312588)
chr3 (241-307)||(36568954-36569020)
chr3 (238-307)||(37807204-37807273)
chr3 (239-307)||(55327495-55327563)
chr3 (241-307)||(21773909-21773975)
chr3 (253-307)||(28581237-28581291)
chr3 (241-307)||(41040001-41040067)
chr3 (241-307)||(52474042-52474108)
chr3 (206-301)||(2387817-2387923)
chr3 (240-307)||(46556271-46556338)
chr3 (242-306)||(18654652-18654716)
chr3 (242-285)||(43005812-43005855)
chr3 (242-307)||(25655021-25655086)
chr3 (206-238)||(651812-651844)
chr3 (238-306)||(27541983-27542051)
chr3 (241-269)||(52185143-52185171)
[»] scaffold0067 (1 HSPs)
scaffold0067 (242-307)||(39238-39303)
[»] chr7 (24 HSPs)
chr7 (238-307)||(24970216-24970285)
chr7 (242-307)||(33655159-33655224)
chr7 (238-307)||(18231710-18231779)
chr7 (237-308)||(10315756-10315827)
chr7 (241-307)||(34235058-34235124)
chr7 (241-307)||(4833582-4833648)
chr7 (241-307)||(32872832-32872898)
chr7 (241-307)||(42306457-42306523)
chr7 (242-307)||(41497008-41497073)
chr7 (238-301)||(22163167-22163229)
chr7 (238-301)||(22221875-22221937)
chr7 (237-308)||(42087118-42087189)
chr7 (241-307)||(47390983-47391049)
chr7 (241-306)||(1051552-1051615)
chr7 (192-307)||(40196583-40196709)
chr7 (242-306)||(40572287-40572350)
chr7 (253-300)||(31553240-31553287)
chr7 (241-306)||(25887319-25887385)
chr7 (238-283)||(37417708-37417753)
chr7 (238-307)||(43230360-43230428)
chr7 (241-302)||(47229888-47229949)
chr7 (241-302)||(13771004-13771063)
chr7 (243-307)||(19835838-19835902)
chr7 (191-235)||(25887258-25887302)
[»] chr5 (28 HSPs)
chr5 (238-307)||(13634835-13634904)
chr5 (242-307)||(28279527-28279592)
chr5 (209-307)||(16501841-16501950)
chr5 (206-301)||(10650510-10650601)
chr5 (241-307)||(36363159-36363225)
chr5 (206-306)||(9856961-9857072)
chr5 (238-307)||(20146917-20146986)
chr5 (238-307)||(36392201-36392270)
chr5 (238-307)||(37607018-37607087)
chr5 (238-307)||(37779227-37779296)
chr5 (192-307)||(7544203-7544329)
chr5 (238-307)||(22023491-22023562)
chr5 (238-307)||(20513496-20513565)
chr5 (239-307)||(26415018-26415086)
chr5 (244-307)||(8502886-8502949)
chr5 (238-307)||(9798663-9798732)
chr5 (242-307)||(14245139-14245204)
chr5 (238-307)||(17024275-17024344)
chr5 (242-306)||(16938607-16938671)
chr5 (238-302)||(32727833-32727897)
chr5 (242-307)||(4373617-4373682)
chr5 (238-283)||(10072722-10072767)
chr5 (256-307)||(1657955-1658006)
chr5 (253-307)||(17780285-17780340)
chr5 (238-281)||(37551531-37551574)
chr5 (238-281)||(37654361-37654404)
chr5 (242-307)||(43535-43601)
chr5 (250-307)||(4423347-4423404)
[»] chr1 (19 HSPs)
chr1 (187-307)||(38509945-38510076)
chr1 (238-307)||(41498528-41498597)
chr1 (238-307)||(8529923-8529992)
chr1 (238-307)||(32951369-32951438)
chr1 (238-307)||(40094984-40095053)
chr1 (241-308)||(43552046-43552109)
chr1 (238-306)||(50744332-50744401)
chr1 (238-304)||(36285628-36285694)
chr1 (238-304)||(45585739-45585805)
chr1 (238-307)||(7444619-7444688)
chr1 (238-307)||(30010456-30010525)
chr1 (241-307)||(35349515-35349579)
chr1 (242-304)||(49946642-49946704)
chr1 (238-306)||(20576185-20576251)
chr1 (240-307)||(10391998-10392066)
chr1 (192-307)||(12234077-12234203)
chr1 (243-308)||(28770852-28770915)
chr1 (241-307)||(51597795-51597861)
chr1 (206-235)||(26940977-26941006)
[»] scaffold0026 (1 HSPs)
scaffold0026 (238-307)||(1296-1365)
[»] scaffold0262 (1 HSPs)
scaffold0262 (241-307)||(16347-16413)
[»] scaffold0294 (1 HSPs)
scaffold0294 (241-307)||(15390-15455)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 6722189 - 6722100
Alignment:
Q  12 ataaagacaaaatgacaaagtgataaaataaccaaaagcagcttattgcatgaacttcattactatagttgtgaaaggttggtttagaag 101  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6722189 ataaagacaaaatgacaaagtgataaaataacgaaaagcagcttattgcatgaacttcattactatagttgtgaaaggttggtttagaag 6722100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 23748219 - 23748288
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  23748219 atcgtttatcatgttaatatgttaactttttaaaagacatttcatagtgtccgtagtttaaaaatgaaaa 23748288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 39732849 - 39732780
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||    
T  39732849 atcgtttatcatgttaatatgttaactttttataaaacatttcataatgttcgtaatttaaaaatgaaaa 39732780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 9631684 - 9631753
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||  | ||||||||||||||| |||||    
T  9631684 atcgtttatcatgttaatatgttaactttttaaaggacatttcatggtgtccgtaatttaaaaacgaaaa 9631753  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 15224810 - 15224745
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||    
T  15224810 tttatcatgttaatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 15224745  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 27926677 - 27926747
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||||||||||||||||||||||||||||   | |||| ||| ||||||||||||||||||||||||    
T  27926677 atcgtttatcatgttaatatgttaactttttaaccaaaatttaatagtatccgtaatttaaaaatgaaaaa 27926747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 16565901 - 16565970
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||| || ||||||||||||||||||| || ||||||| |||||||||||||||||| ||||    
T  16565901 atcgtttatcatatttatatgttaactttttaaaaaacgtttcatagtatccgtaatttaaaaataaaaa 16565970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 6721804 - 6721756
Alignment:
Q  187 aaaccacggaatatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6721804 aaaccacggaatatatagcatgtttttctaaaataaatcaagtgtgatt 6721756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 34209591 - 34209657
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| | |||||||| | |  ||||||||||||||||||    
T  34209591 gtttatcatgttaatatgttaactttttaaaaaatatttcatagtgtttgtaatttaaaaatgaaaa 34209657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 36046320 - 36046254
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||| |||||||||||||||||||||||||| ||||||  || | ||||||||||||||||||||||    
T  36046320 tttaacatgttaatatgttaactttttaaaaaacattttctagtgtccgtaatttaaaaatgaaaaa 36046254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 36347658 - 36347592
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||| ||||||| | || ||||| |||||||||| ||||||||||||    
T  36347658 gtttatcatgttaatatgttaactatttaaaaaatatgtcatagtatccgtaatataaaaatgaaaa 36347592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 36566967 - 36566901
Alignment:
Q  242 tttatcatgttaatatgttaacttttta-aaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||| ||| |  ||||||||| |||||||||||||||||||||    
T  36566967 tttatcatgttaatatgttaactttttataaaaaactttcataatgtccgtaatttaaaaatgaaaa 36566901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 42316884 - 42316815
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||| | |  | ||||||||||||||||    
T  42316884 atcgtttatcatgttaatacgttaactttttaaaaaacatttcatagtgtttgcaatttaaaaatgaaaa 42316815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 12541890 - 12541949
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaattta 297  Q
    |||||||||||||||||| |||||||||||||||| |||||| ||| |||| ||||||||    
T  12541890 atcgtttatcatgttaatgtgttaactttttaaaaaacattttatagtatctgtaattta 12541949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 17379939 - 17379994
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaattt 296  Q
    |||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||    
T  17379939 gtttatcatgttaatatgctaactttttaaaaaacatttcatagtgtccgtaattt 17379994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 1583222 - 1583270
Alignment:
Q  259 ttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||| |||||||||| | |||||||||||||||||||||    
T  1583222 ttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 1583270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 6721955 - 6721918
Alignment:
Q  92 ggtttagaagtgtataaaaagcaattggacccaccttt 129  Q
    |||||||||||||||||||||||||||||| |||||||    
T  6721955 ggtttagaagtgtataaaaagcaattggactcaccttt 6721918  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 39821797 - 39821862
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||| ||||||    |||||||| | ||||||||||||||| |||||    
T  39821797 tttatcatgttaatatgttaactctttaaatattatttcatagtgtccgtaatttaaaaaagaaaa 39821862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 7681386 - 7681437
Alignment:
Q  256 atgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||| |||| | ||||||||||||||| ||||||||||| ||||    
T  7681386 atgttaacttttaaaaaaatatttcataatatccgcaatttaaaaataaaaa 7681437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 8426981 - 8426930
Alignment:
Q  256 atgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||| |||||||||| | ||| |||||||||||| ||||    
T  8426981 atgttaactttttaaaaaacatttcatagtgtccttaatttaaaaattaaaa 8426930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 28262563 - 28262500
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaa 301  Q
    |||||||||||||||| ||| |||||||||||||| | |||||||| | | | |||||||||||    
T  28262563 atcgtttatcatgttattatattaactttttaaaaaatatttcatagtgttcataatttaaaaa 28262500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 19566939 - 19566878
Alignment:
Q  240 cgtttatcatgttaatatgttaacttttt-aaaagacatttcataatatccgtaatttaaaa 300  Q
    |||||||||| |||||||| ||||||||| |||| |||||||||| | || |||||||||||    
T  19566939 cgtttatcattttaatatgctaactttttaaaaaaacatttcatagtgtctgtaatttaaaa 19566878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 23748157 - 23748205
Alignment:
Q  187 aaaccacggaatatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    |||| ||||| ||||||  ||||||||| ||||||||||||||||||||    
T  23748157 aaactacggactatataacatgtttttcaaaaataaatcaagtgtgatt 23748205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 29525911 - 29525867
Alignment:
Q  191 cacggaatatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    ||||||||||||| ||||||||| |||||||||| || |||||||    
T  29525911 cacggaatatataatatgtttttttaaaataaattaaatgtgatt 29525867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 33041543 - 33041656
Alignment:
Q  198 tatatagtatgtttttctaaaataaatcaagtgtgattaaatcgtt---tatcatgttaatatgttaactttttaaaagacatttcataatatccgtaat 294  Q
    |||||| | ||||||| |||||||||| |||||||||| ||  |||   ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  33041543 tatataatgtgtttttttaaaataaattaagtgtgattgaagtgttatttatcatgttaatatgttaactttttaaaaaacatttcatagtatccgtaat 33041642  T
Q  295 ttaaaaatgaaaaa 308  Q
    |||||||| |||||    
T  33041643 ttaaaaataaaaaa 33041656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 21606964 - 21606895
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||    
T  21606964 atcgtttatcatgttaatatgttaactttttataaaacatttcatagtttccgtaatttaaaaatgaaaa 21606895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 10348918 - 10348850
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    |||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  10348918 atcgtttatcgtattaatatgttaactttttaaaagatatttcatattatccgtaatttaaaaatgaaa 10348850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 4097632 - 4097563
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||| ||||    
T  4097632 atcgtttatcatgttaatatgttaactttttaaaaaacatttcaaagtgtccgtaatttaaaaattaaaa 4097563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 665957 - 665890
Alignment:
Q  242 tttatcatgttaatatgttaac-tttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| | ||||||||||||||||||    
T  665957 tttatcatgttaatatgttaaaatttttaaaagacatttcataatattcataatttaaaaatgaaaaa 665890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 31849237 - 31849303
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| ||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||    
T  31849237 gtttatcacgttaatatgttaattttttaaaagacattttatagtgtccgtaatttaaaaatgaaaa 31849303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 33236078 - 33236143
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||    
T  33236078 gtttatcatgttaatatgttaactttttaaaa-aaatttcatagtgtccgtaatttaaaaatgaaaa 33236143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 1390447 - 1390512
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||| | |||||||| | || ||||||||||||||||||    
T  1390447 tttatcatgttaatatgttaactttttaaaaaatatttcatagtgtcagtaatttaaaaatgaaaa 1390512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 10818344 - 10818409
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||  |||||||| |||||||||| | |||||||||||||||||||||    
T  10818344 tttatcatgttaatatgttaatattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 10818409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 5585423 - 5585352
Alignment:
Q  237 aatcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||| | | ||||||||||||| ||||||    
T  5585423 aatcgtttattatgttaatatgttacctttttaaaaaacatttcatagtgttcgtaatttaaaaaagaaaaa 5585352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 9719148 - 9719081
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||  |||||||||||||||||||||| ||||| |||| | ||||||||||||||||||||||    
T  9719148 gtttatcaaattaatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaa 9719081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 9721255 - 9721188
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||  |||||||||||||||||||||| ||||| |||| | ||||||||||||||||||||||    
T  9721255 gtttatcaaattaatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaa 9721188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 1300747 - 1300813
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| |||||||||||||||||||| || | |||||||| | |||||||||||||||||||||    
T  1300747 gtttatcaggttaatatgttaactttttataaaatatttcatattgtccgtaatttaaaaatgaaaa 1300813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 30487422 - 30487357
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||| ||||||||    
T  30487422 gtttatcatgttaatatgttgactttttaaaagacatttcatactgtcc-taatttaacaatgaaaa 30487357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 34176459 - 34176528
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| |||||||||||||||||||  |||| | |||||||| | |||||||||||||||||||||    
T  34176459 atcgtttattatgttaatatgttaactttaaaaaaaatatttcatagtgtccgtaatttaaaaatgaaaa 34176528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 2900037 - 2900103
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||| ||| || |||||||||| | ||  |||||||||||||||||    
T  2900037 gtttatcatgttaatatgttaacttcttataaaacatttcatagtgtctataatttaaaaatgaaaa 2900103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 9298625 - 9298679
Alignment:
Q  254 atatgttaactttttaaaaga-catttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||    
T  9298625 atatgttaactttttaaaaaaacatttcataatgtccgtaatttaaaattgaaaa 9298679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 34176402 - 34176445
Alignment:
Q  192 acggaatatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||    
T  34176402 acggattatataacatgtttttctaaaataaatcaagtgtgatt 34176445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 12811151 - 12811114
Alignment:
Q  198 tatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  12811151 tatataatatgtttttctaaaataaattaagtgtgatt 12811114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 19278158 - 19278085
Alignment:
Q  238 atcgtttatcatgttaatat----gttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||    || |||||||||||| | |||| ||| | || ||||||||||||||||||    
T  19278158 atcgtttatcatgttaatatatatgtcaactttttaaaaaatattttatagtgtcagtaatttaaaaatgaaaa 19278085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 30487487 - 30487439
Alignment:
Q  187 aaaccacggaatatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    |||| ||||| ||||||  |||||||| |||||||||||||||||||||    
T  30487487 aaactacggactatataacatgtttttataaaataaatcaagtgtgatt 30487439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 45742014 - 45742083
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  45742014 atcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 45742083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 49735650 - 49735519
Alignment:
Q  187 aaaccacggaatatatagtatgtttttctaaaataaatcaagtgtgattaa-----------atcgtttatcatgttaatatgttaactttttaaaagac 275  Q
    |||| ||||| ||||||  |||||||||||||||||||||||||||||  |           ||||||||||||||||||| ||||||||||||||||||    
T  49735650 aaactacggactatataacatgtttttctaaaataaatcaagtgtgatagaaatattatattatcgtttatcatgttaataggttaactttttaaaagac 49735551  T
Q  276 atttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||  | |||||||||||||||||||||    
T  49735550 atttcatgttgtccgtaatttaaaaatgaaaa 49735519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 31348438 - 31348372
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||    
T  31348438 gtttatcatgttaatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 31348372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 54935193 - 54935263
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  54935193 atcgtttatcatattaatatgataactttttaaaatacatttcatagtgtccgtaatttaaaaatgaaaaa 54935263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 24565463 - 24565397
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| ||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  24565463 gtttatcacgttaataagttaactttttaaaaagcatttcgtaatatccgtaatttaaaaatgaaaa 24565397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 34110929 - 34110997
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||| ||||    
T  34110929 atcgtttatcatgttaatatgttaactttttaaaaaacatttcacagtat-cgtaatttaaaaataaaaa 34110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 27735873 - 27735939
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||||||||||| ||||| ||||||| |||||| ||| | ||||||||||||||||||||||    
T  27735873 tttatcatgttaatatgctaactctttaaaaaacattttatagtgtccgtaatttaaaaatgaaaaa 27735939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 54320561 - 54320627
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||| ||||||||||||| || ||||||| | |||||||||||||||| ||||    
T  54320561 gtttatcatgttaatatgctaactttttaaaaaacgtttcatagtgtccgtaatttaaaaattaaaa 54320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 16400924 - 16400987
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaa 301  Q
    |||||||||||||||||||||||||||||||||||   |||||||| | ||| |||||||||||    
T  16400924 atcgtttatcatgttaatatgttaactttttaaaaactatttcatagtgtccctaatttaaaaa 16400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 6938394 - 6938440
Alignment:
Q  261 aactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  6938394 aactttttaaaaaacattttataatatccgtaatttaaaaatgaaaa 6938440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 29798408 - 29798478
Alignment:
Q  238 atcgtttatcatgtt-aatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||||| || ||||||| ||||||||| |||||||||| | |||||||||||||||||||||    
T  29798408 atcgtttattatgtttaacatgttaattttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 29798478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 17938227 - 17938158
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||| ||| |||| ||||||||| ||||| |||||| ||| ||||||||||| |||||    
T  17938227 atcgtttatcatgttattattttaaatttttaaaaaacattccataatgtccataatttaaaaacgaaaa 17938158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 2247920 - 2247853
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||| |||||| |||||  |||||| | |||||| ||||| ||||||||||||||||||||||    
T  2247920 gtttatcatattaataagttaagattttaataaacattttataatgtccgtaatttaaaaatgaaaaa 2247853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 46007817 - 46007750
Alignment:
Q  242 tttatcatgttaatatgttaacttttt-aaaagaca-tttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||| |||| ||| |||||| || || ||||||||||||||||||    
T  46007817 tttatcatgttaatatgttaactttttaaaaaaacattttcattatgtcggtaatttaaaaatgaaaa 46007750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 1968536 - 1968444
Alignment:
Q  192 acggaatatatagtatgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaag 273  Q
    ||||| |||||| |||||||||||||||||||||| |||||||| ||           ||||||||||||||||||||||||||||| |||||    
T  1968536 acggactatataatatgtttttctaaaataaatcaggtgtgattgaagtattatatgatcgtttatcatgttaatatgttaacttttaaaaag 1968444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 41174418 - 41174538
Alignment:
Q  198 tatatagtatgtttttctaaaataaatcaagtgtgattaa-----------atcgtttatcatgttaatatgttaactttttaaaagacatttcataata 286  Q
    ||||||| |||||||||||||||||||||| ||||||| |           ||| ||||| ||||||||||| |||||||||||||  ||||||||| |     
T  41174418 tatatagcatgtttttctaaaataaatcaaatgtgattgatgtattatatgatcatttattatgttaatatgctaactttttaaaaaccatttcatagtg 41174517  T
Q  287 tccgtaatttaaaaatgaaaa 307  Q
    ||| ||| |||||||||||||    
T  41174518 tccctaaattaaaaatgaaaa 41174538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 26167061 - 26167118
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatt 295  Q
    ||||||||||||||||||||||||||| || |||| |||||||| | | |||||||||    
T  26167061 atcgtttatcatgttaatatgttaactcttaaaaaaacatttcaaagtgtccgtaatt 26167118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 5730946 - 5730882
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||||||||||||||||| || |||| | |||| |||   ||||||||||||||||||||    
T  5730946 tttatcatgttaatatgttaactcttcaaaaaatattttatagggtccgtaatttaaaaatgaaa 5730882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 45132621 - 45132559
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaa 301  Q
    |||||||||||| |||||||||||||||||||||| ||||||| || | | | |||||||||||    
T  45132621 atcgtttatcattttaatatgttaactttttaaaa-acatttcgtagtgtacataatttaaaaa 45132559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 36151700 - 36151734
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaa 272  Q
    |||||||||||||||||||||||||||||| ||||    
T  36151700 atcgtttatcatgttaatatgttaacttttaaaaa 36151734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 47433828 - 47433760
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| |||||| ||| |||| ||||||||| ||||| |||||| ||| ||||||||||| |||||    
T  47433828 atcgtttat-atgttattattttaattttttaaaaaacattccataatgtccataatttaaaaacgaaaa 47433760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 16077 - 16144
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16077 gtttttcatattaatatgttaactttttaaaaaacatttcataatatccgtaatttaaaaatgaaaaa 16144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 11575569 - 11575457
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaat 294  Q
    ||||||||||||||||||| |||||||||||||           |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  11575569 atgtttttctaaaataaattaagtgtgattaaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtatccttaat 11575470  T
Q  295 ttaaaaatgaaaa 307  Q
    |||| ||||||||    
T  11575469 ttaagaatgaaaa 11575457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 11785653 - 11785719
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||| ||||||||||||| | |||||||||| |||||||||||||||||||||    
T  11785653 gtttatcatgttaatatgctaactttttaaaaaatatttcataatgtccgtaatttaaaaatgaaaa 11785719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 1281267 - 1281336
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||    
T  1281267 atcgtttattatgttaatatgttaactttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaa 1281336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 16653073 - 16653142
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||  |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  16653073 atcgtttattttgttaatatgttaactttttcaaaaacatttcataatgtccgtaatttaaaaatgaaaa 16653142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 31543190 - 31543123
Alignment:
Q  240 cgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||||||    
T  31543190 cgtttatgatgttaatatgttaacttttttaaaaacatttcatagtttccgtaatttaaaaatgaaaa 31543123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 9718596 - 9718530
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||| |||||||||||||  ||||||||| | |||||||||||||||||||||    
T  9718596 gtttatcatgttaatatgctaactttttaaaaaccatttcatagtgtccgtaatttaaaaatgaaaa 9718530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 30479880 - 30479768
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaat 294  Q
    |||||||||||||||||||||||||||||| ||           || |||||||  ||||||||||||||||||||||||||||||||| | || |||||    
T  30479880 atgtttttctaaaataaatcaagtgtgattgaagtattatattatcatttatcaccttaatatgttaactttttaaaagacatttcatagtgtctgtaat 30479781  T
Q  295 ttaaaaatgaaaa 307  Q
    |||||||||||||    
T  30479780 ttaaaaatgaaaa 30479768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 34634277 - 34634337
Alignment:
Q  248 atgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||    
T  34634277 atgttaatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaataaaaaa 34634337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 6315186 - 6315256
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||||| ||||||||||||| ||||| ||| |||||||||| | |||||| |||||||||||||||    
T  6315186 atcgtttatcaagttaatatgttaatttttttaaaaacatttcatagtgtccgtattttaaaaatgaaaaa 6315256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 11033541 - 11033611
Alignment:
Q  238 atcgtttatcatgttaatatgttaacttttt-aaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||||||| | |||||||||| ||||||    
T  11033541 atcgtttatcatgttaatatgttaattttttaaaaaaacatttcataatattcataatttaaaattgaaaa 11033611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 1026969 - 1026900
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||| | || | |||||||| | |||| ||||||||||||||||    
T  1026969 atcgtttatcatgttaatatgttaacttttgataaaatatttcatagtgtccgcaatttaaaaatgaaaa 1026900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 30664487 - 30664555
Alignment:
Q  240 cgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||||| |||||||||||||||||||||| | ||||  |||| |||||||||||||| |||||||    
T  30664487 cgtttatcatattaatatgttaactttttaaaaaatattttgtaatgtccgtaatttaaaactgaaaaa 30664555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 7503117 - 7503009
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaa-----------atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaat 294  Q
    ||||||||||||||||||| ||||||||||||           || ||||||||||||||||||||||||||||| || |||||||||| | |  |||||    
T  7503117 atgtttttctaaaataaattaagtgtgattaaagtattatatgattgtttatcatgttaatatgttaactttttataaaacatttcatagttttggtaat 7503018  T
Q  295 ttaaaaatg 303  Q
    |||||||||    
T  7503017 ttaaaaatg 7503009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 28083869 - 28083934
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    |||||||||||| | ||||||||| ||||||| |||| ||||| ||||||||||||||||| ||||    
T  28083869 gtttatcatgttgacatgttaactctttaaaaaacatatcatagtatccgtaatttaaaaaagaaa 28083934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 37923194 - 37923129
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||| |||||| ||||||| |||||||||| | | | |||||||||||||||||    
T  37923194 tttatcatgttaatattttaactctttaaaaaacatttcatagtgttcataatttaaaaatgaaaa 37923129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 31738551 - 31738615
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||||||||||||||||| || |||| | |||| ||| | ||||||||||||||||||||    
T  31738551 tttatcatgttaatatgttaactcttcaaaaaatattttatagtgtccgtaatttaaaaatgaaa 31738615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 36308970 - 36309036
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||| |||||| |||| | |||||| ||| | ||||||||||| |||||||    
T  36308970 gtttatcatgttaatatgtttacttttaaaaatatatttcacaatgtacgtaatttaaagatgaaaa 36309036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 29358459 - 29358391
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||||||||||||||| ||||||||| | |||| ||| | |||||||||||||||| ||||    
T  29358459 atcgtttataatgttaatatgttaa-tttttaaaaaatattttatagtgtccgtaatttaaaaataaaaa 29358391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 29691042 - 29690973
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||| ||| | ||||| || |||| |||  ||| |||||||||    
T  29691042 atcgtttatcatgttaatatgttaacttttttaaaaatatttcctagtatcagtatgttataaatgaaaa 29690973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 2248586 - 2248645
Alignment:
Q  248 atgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| |||||||||| |||| | |||||||| | |||||||||||||||| ||||    
T  2248586 atgttaataagttaacttttaaaaaaatatttcatagtgtccgtaatttaaaaataaaaa 2248645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 37032506 - 37032561
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaattt 296  Q
    ||||||||| |||||||||||||||||||||| ||| ||| || | ||||||||||    
T  37032506 gtttatcatcttaatatgttaactttttaaaaaacacttcctagtgtccgtaattt 37032561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 42650513 - 42650470
Alignment:
Q  192 acggaatatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||    
T  42650513 acggaatatataacatgtttttctaaaataaattaagtgtgatt 42650470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 2248533 - 2248562
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgatt 235  Q
    ||||||||||||||||||||||||||||||    
T  2248533 atgtttttctaaaataaatcaagtgtgatt 2248562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 7979268 - 7979333
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||| |||||  |||||| | ||||||||   | |||||||||||||||||||||    
T  7979268 tttatcatgttaataagttaaacttttaataaacatttcacggtgtccgtaatttaaaaatgaaaa 7979333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 34633814 - 34633847
Alignment:
Q  202 tagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    |||| |||||||||||||||||||||||||||||    
T  34633814 tagtttgtttttctaaaataaatcaagtgtgatt 34633847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 3726965 - 3726913
Alignment:
Q  256 atgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||| ||||||| ||||| |||  | ||||||||||||||||||||||    
T  3726965 atgttaactatttaaaaaacattccatggtgtccgtaatttaaaaatgaaaaa 3726913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 13405100 - 13405173
Alignment:
Q  238 atcgtttatcatgttaatatgttaa----ctttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||| |||||    ||||| |||| | ||||  |||| |||||||||||||||||||||    
T  13405100 atcgtttatcatgttaatacgttaattcacttttaaaaaaatattttttaatgtccgtaatttaaaaatgaaaa 13405173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 220514 - 220448
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  220514 gtttattatgttaatatgttaactttttaaaaaacatttcataatgtccgtaatttaaaaatgaaaa 220448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 24560341 - 24560410
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||    
T  24560341 atcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtcggtaatttaaaaatgaaaa 24560410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 37102264 - 37102200
Alignment:
Q  243 ttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  37102264 ttattatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 37102200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 30200268 - 30200139
Alignment:
Q  192 acggaatatatagtatgtttttctaaaataaatcaagtgtgattaaa--------------tcgtttatcatgttaatatgttaactttttaaaagacat 277  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||              | |||||| |||||||||||| |||||||||||| ||||    
T  30200268 acggactatataacatgtttttctaaaataaatcaagtgtgattaaagtactatatgatcgttgtttattatgttaatatgtaaactttttaaaaaacat 30200169  T
Q  278 ttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||| | |||||||||||||||||||||    
T  30200168 ttcatagtgtccgtaatttaaaaatgaaaa 30200139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 41110438 - 41110372
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||| || | |||||||| | |||||||||||||||||||||    
T  41110438 gtttatcatgttaatatgttaactttttataaaatatttcatagtgtccgtaatttaaaaatgaaaa 41110372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 10748406 - 10748345
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatg 303  Q
    ||||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||    
T  10748406 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 10748345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 16275868 - 16275758
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaat 294  Q
    |||||||||||||||||||||||||||||| ||           | |||||||||||||||| |||||||||||| || |||||||||||| |||| |||    
T  16275868 atgtttttctaaaataaatcaagtgtgattgaagtattatatggttgtttatcatgttaataagttaactttttataaaacatttcataatgtccgaaat 16275769  T
Q  295 ttaaaaatgaa 305  Q
    |||||||||||    
T  16275768 ttaaaaatgaa 16275758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 9312588 - 9312522
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||| || | |||||||| | || ||||||||||||||||||    
T  9312588 gtttatcatgttaatatgttaactttttacaaaatatttcatagtgtctgtaatttaaaaatgaaaa 9312522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 36569020 - 36568954
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||| ||| |||||||||| | | || ||||||||||||||||    
T  36569020 gtttatcatgttaatatgttaactttttgaaaaacatttcatagtgttcgaaatttaaaaatgaaaa 36568954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 37807204 - 37807273
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| | |||  |||||||||| |||||    
T  37807204 atcgtttatcatgttaatatattaactttttaaaaaacatttcatagtgtccaaaatttaaaaacgaaaa 37807273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 55327495 - 55327563
Alignment:
Q  239 tcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| ||||||||| | ||||||||||||| |||||||||||| ||||| ||||||||| |||||    
T  55327495 tcgtttattatgttaatacgctaactttttaaaaaacatttcataatgtccgtgatttaaaaacgaaaa 55327563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 21773909 - 21773975
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||| |||||||||||||||||||| ||||||| || | | |||||||||||||| ||||    
T  21773909 gtttatcatgtaaatatgttaactttttaaaaaacatttcctagtgttcgtaatttaaaaataaaaa 21773975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 28581291 - 28581237
Alignment:
Q  253 aatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||| | |||||| |||||| ||||||||||||||||||    
T  28581291 aatatgttaactttttaaaaaatatttcacaatatctgtaatttaaaaatgaaaa 28581237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 41040067 - 41040001
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||| || | |||||||| | || ||||||||||| ||||||    
T  41040067 gtttatcatgttaatatgttaactttttataaaatatttcatagtgtctgtaatttaaaattgaaaa 41040001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 52474042 - 52474108
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||||||||||||||||||| || | ||||||||  ||||||||||||||||| ||||    
T  52474042 gtttatcatattaatatgttaactttttacaaaatatttcataggatccgtaatttaaaaataaaaa 52474108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 2387923 - 2387817
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaaat-----------cgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaat 294  Q
    ||||||||||||||||||| ||||||||||||||           |||||||||||||| ||| ||||||| |||||| ||||| |||| | ||||||||    
T  2387923 atgtttttctaaaataaattaagtgtgattaaattattatatgatcgtttatcatgttattattttaacttattaaaaaacattccatagtgtccgtaat 2387824  T
Q  295 ttaaaaa 301  Q
    |||||||    
T  2387823 ttaaaaa 2387817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 46556271 - 46556338
Alignment:
Q  240 cgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||| |||||||||||| |||||||||||||| | || ||||| | ||||||||| |||||||||||    
T  46556271 cgtttgtcatgttaatatcttaactttttaaaaaatatgtcatagtgtccgtaattgaaaaatgaaaa 46556338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 18654716 - 18654652
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||||||||||||||||| || |||| | |||| |||   ||||||||||||||||||||    
T  18654716 tttatcatgttaatatgttaactcttcaaaaaatattttatagggtccgtaatttaaaaatgaaa 18654652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 43005855 - 43005812
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataat 285  Q
    |||||||| |||||||||||||||||||||| | ||||||||||    
T  43005855 tttatcatattaatatgttaactttttaaaaaatatttcataat 43005812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 25655086 - 25655021
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| |||||||||||||| || |||| ||||||| || | | |||||| ||||||||||||    
T  25655086 tttatcatattaatatgttaactcttcaaaaaacatttcttagtgttcgtaatataaaaatgaaaa 25655021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 651812 - 651844
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaaa 238  Q
    ||||||||||||||||||| |||||||||||||    
T  651812 atgtttttctaaaataaattaagtgtgattaaa 651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 27542051 - 27541983
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||||||||||||||||||  ||||||| |   |||||||| | ||  ||||||||||||||||    
T  27542051 atcgtttatcatgttaatatgttagatttttaacaagtatttcatagtgtctctaatttaaaaatgaaa 27541983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 52185143 - 52185171
Alignment:
Q  241 gtttatcatgttaatatgttaacttttta 269  Q
    |||||||||||||||||||||||||||||    
T  52185143 gtttatcatgttaatatgttaacttttta 52185171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 39303 - 39238
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  39303 tttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 39238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 24970285 - 24970216
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  24970285 atcgtttatcaagttaatatgttaactttttaaaaaatatttcatagtatccgtaatttaaaaatgaaaa 24970216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 33655224 - 33655159
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  33655224 tttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 33655159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 18231710 - 18231779
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| | |  ||||||||||||||||||    
T  18231710 atcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaa 18231779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 10315756 - 10315827
Alignment:
Q  237 aatcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||||| | |||||| |||||||||||||||    
T  10315756 aatcgtttatcttgttaatatgttaaatttttaaaaaacatttcatagtgtccgtattttaaaaatgaaaaa 10315827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 34235124 - 34235058
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||||||||||||||||||| || |||||||||| | |||||||||||||||||||||    
T  34235124 gtttatcatattaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaa 34235058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 4833648 - 4833582
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||| |||||||||||| || |||||||||| | || ||||||||||||||||||    
T  4833648 gtttatcatgttaataggttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaa 4833582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 32872898 - 32872832
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||||   |||| ||||||| ||||||||||||| |||||    
T  32872898 gtttatcatgttaatatgttaactttttaaaaagtattttataatattcgtaatttaaaaaagaaaa 32872832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 42306457 - 42306523
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||| | ||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||    
T  42306457 gtttatgaggttaatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 42306523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 41497073 - 41497008
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||| ||||||||| ||||||| || | |||||||||||||||| ||||    
T  41497073 tttatcatgttaatatgttaaatttttaaaaaacatttcctattgtccgtaatttaaaaataaaaa 41497008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 22163229 - 22163167
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaa 301  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||| | |||||||||||||||    
T  22163229 atcgtttatcatgttaatatgtta-ctttctaaaaaacatttcatagtgtccgtaatttaaaaa 22163167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 22221937 - 22221875
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaa 301  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||| | |||||||||||||||    
T  22221937 atcgtttatcatgttaatatgtta-ctttctaaaaaacatttcatagtgtccgtaatttaaaaa 22221875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 42087118 - 42087189
Alignment:
Q  237 aatcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||| ||| ||||||||| ||||||||||||| || ||  |||||| |||||||||||||||||||||    
T  42087118 aatcgtttgtcacgttaatatgctaactttttaaaaaactttgtataatacccgtaatttaaaaatgaaaaa 42087189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 47390983 - 47391049
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||| |||||||| |  ||| ||| | |||||||||||||||||||||    
T  47390983 gtttatcatgttaatatgttaacattttaaaaaatgttttatagtgtccgtaatttaaaaatgaaaa 47391049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 1051615 - 1051552
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||||| |||||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  1051615 gtttatcatgt-aatatgttaactttttaaaaaacatttcat-gtgtccgtaatttaaaaatgaaa 1051552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 40196709 - 40196583
Alignment:
Q  192 acggaatatatagtatgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagacatttc 280  Q
    ||||||||||||  ||||||||||||||||||| |||||||||| ||           | |||||||| ||| |||||||||||||||| || ||||||     
T  40196709 acggaatatataacatgtttttctaaaataaattaagtgtgattgaagtattatatgattgtttatcaggttgatatgttaactttttataaaacatttt 40196610  T
Q  281 ataatatccgtaatttaaaaatgaaaa 307  Q
    ||| | ||||||||| |||||||||||    
T  40196609 atagtgtccgtaattcaaaaatgaaaa 40196583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 40572350 - 40572287
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    |||||||||||||||||||||| |||||||| | |||| |||  |||||||||||||||||||||    
T  40572350 tttatcatgttaatatgttaac-ttttaaaaaatattttatagcatccgtaatttaaaaatgaaa 40572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 31553287 - 31553240
Alignment:
Q  253 aatatgttaactttttaaaagacatttcataatatccgtaatttaaaa 300  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  31553287 aatatgttaactttttaaaaaacatttcataatgtccgttatttaaaa 31553240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 25887319 - 25887385
Alignment:
Q  241 gtttatcatgttaatatgttaactttt-taaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||| |||||||||||||||||  |||| ||||||||| || | ||||||||||||||||||    
T  25887319 gtttatcatattaatatgttaacttttaaaaaaaacatttcatgattttcgtaatttaaaaatgaaa 25887385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 37417753 - 37417708
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcata 283  Q
    |||||||||||||| ||||||||||||||||| || ||||||||||    
T  37417753 atcgtttatcatgtgaatatgttaactttttagaaaacatttcata 37417708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 43230360 - 43230428
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||| |||| | | |||| | | |||||||||||||||| ||||    
T  43230360 atcgtttatcatgttaatatgttaacttttaaaaaaaaaattca-agtgtccgtaatttaaaaataaaaa 43230428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 47229949 - 47229888
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaat 302  Q
    ||||||||||||||||||||  |||||||| | | ||||||||||| ||||| |||||||||    
T  47229949 gtttatcatgttaatatgttcgctttttaagaaatatttcataatacccgtagtttaaaaat 47229888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 13771063 - 13771004
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaat 302  Q
    ||||||||||||||||||||||||||||| |  | |||| ||| | ||||||||||||||||    
T  13771063 gtttatcatgttaatatgttaactttttata--atattttatagtgtccgtaatttaaaaat 13771004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 19835838 - 19835902
Alignment:
Q  243 ttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||| |||||| ||| |||| ||||||||  |||||| ||| | |||||||||||||||||||||    
T  19835838 ttatgatgttattattttaattttttaaagaacattttatagtttccgtaatttaaaaatgaaaa 19835902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 25887258 - 25887302
Alignment:
Q  191 cacggaatatatagtatgtttttctaaaataaatcaagtgtgatt 235  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||||    
T  25887258 cacggactatataacatgtttttctaaaataaattaagtgtgatt 25887302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 13634835 - 13634904
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||    
T  13634835 atcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgttcgtaatttaaaaatgaaaa 13634904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 28279592 - 28279527
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  28279592 tttatcatgttaatatgttaactttttaaaaaacatttcataatgtccataatttaaaaatgaaaa 28279527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 16501950 - 16501841
Alignment:
Q  209 tttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaattta 297  Q
    ||||||||||||||||||||||||||||||           || ||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  16501950 tttttctaaaataaatcaagtgtgattaaagttttatatgatcatttattatgttaatatgttaacttttaaaaaaacatttcataatgtccgtaattta 16501851  T
Q  298 aaaatgaaaa 307  Q
    ||||||||||    
T  16501850 aaaatgaaaa 16501841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 10650510 - 10650601
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaaatcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaa 301  Q
    ||||||||||||||||||| |||||||||| ||     ||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||    
T  10650510 atgtttttctaaaataaattaagtgtgattgaag----tatcatggtaatatgttaactttttataaaacatttcatagtatccgtaatttaaaaa 10650601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 36363159 - 36363225
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  36363159 gtttatcatgctaatatgttaactttctaaaagacattttatagtatccgtaatttaaaaatgaaaa 36363225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 9856961 - 9857072
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaat 294  Q
    |||||||||||||||||||||||||||||| ||           |||||||| ||||||||||||||||||||||||| |||||||||| | |||||||     
T  9856961 atgtttttctaaaataaatcaagtgtgattgaagtattatatgatcgtttattatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaac 9857060  T
Q  295 ttaaaaatgaaa 306  Q
    ||||||||||||    
T  9857061 ttaaaaatgaaa 9857072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 20146986 - 20146917
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||    
T  20146986 atcgcttatcatgttaatatgttaactttttaaaaaacatttcatagtgaccgtaatttaaaaatgaaaa 20146917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 36392270 - 36392201
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| || |||||||||| | || ||||||||||||||||||    
T  36392270 atcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaa 36392201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 37607018 - 37607087
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| || |||||||||| |||| ||| ||||||||||||||    
T  37607018 atcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtattttaaaaatgaaaa 37607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 37779227 - 37779296
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| || |||||||||| |||| ||| ||||||||||||||    
T  37779227 atcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtagtttaaaaatgaaaa 37779296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 307
Target Start/End: Original strand, 7544203 - 7544329
Alignment:
Q  192 acggaatatatagtatgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagacatttc 280  Q
    ||||| ||||||  |||||||||||||||||||||||||||||| ||           | |||||| ||||||||||| ||||||||||||| |||||||    
T  7544203 acggactatataacatgtttttctaaaataaatcaagtgtgattgaagtattatatgattgtttattatgttaatatgctaactttttaaaaaacatttc 7544302  T
Q  281 ataatatccgtaatttaaaaatgaaaa 307  Q
    ||| | |||||||||||||||||||||    
T  7544303 atagtgtccgtaatttaaaaatgaaaa 7544329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 22023491 - 22023562
Alignment:
Q  238 atcgtttatcatgttaatatgttaac-tttttaaaagacatttcat-aatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  22023491 atcgtttatcatgttaatatgttaacttttttaaaaaacatttcataaatatccgtaatttataaatgaaaa 22023562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 20513565 - 20513496
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| | || ||| ||||||||||||||    
T  20513565 atcgtttatcatgataatatgttaactttttaaaaaacatttcatagtgtctgtagtttaaaaatgaaaa 20513496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 26415018 - 26415086
Alignment:
Q  239 tcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||||| || |||||||||| | || |||| |||||||||||||    
T  26415018 tcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaacttaaaaatgaaaa 26415086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 8502949 - 8502886
Alignment:
Q  244 tatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||| ||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  8502949 tatcatattaatttgttaactttttaaaaaatatttcataatgtccgtaatttaaaaatgaaaa 8502886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 9798732 - 9798663
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||| ||||||||| || || ||||||||||| ||||||| || |||||||||||||||||||||||    
T  9798732 atcgtttttcatgttaaaatattgactttttaaaaaacatttcgtagtatccgtaatttaaaaatgaaaa 9798663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 14245204 - 14245139
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||| ||||| |||||||| | | ||||||||||||||| |||||    
T  14245204 tttatcatgttaatatgttaactttctaaaaaacatttcacagtgtccgtaatttaaaaaagaaaa 14245139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 17024344 - 17024275
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||| ||||||||||||| ||||||||||||  |||||||||||| || | ||||||||||||||||    
T  17024344 atcgtttttcatgttaatatgataactttttaaagaacatttcataatgtctgcaatttaaaaatgaaaa 17024275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 16938607 - 16938671
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| | || |||||||||||||||||    
T  16938607 tttatcatgttaacatgttaactctttaaaaaacatttcatagtgtcagtaatttaaaaatgaaa 16938671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 32727897 - 32727833
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaat 302  Q
    |||||||||||||||||||||||   ||||||||| | ||||||||||| |||||||||||||||    
T  32727897 atcgtttatcatgttaatatgttcgttttttaaaaaatatttcataatacccgtaatttaaaaat 32727833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 4373682 - 4373617
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||| |||| | |||||| | | |||||||||||||||| ||||    
T  4373682 tttatcatgttaatatgttaacttttaaaaaaatatttcacagtgtccgtaatttaaaaattaaaa 4373617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 10072767 - 10072722
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcata 283  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||    
T  10072767 atcgtttatcatgttaatatgttaactttttaaaaaatatttcata 10072722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 1657955 - 1658006
Alignment:
Q  256 atgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||| |||||| ||| | |||||||||||||||||||||    
T  1657955 atgttaactttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaa 1658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 17780340 - 17780285
Alignment:
Q  253 aatatgttaactttttaaaaga-catttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||    
T  17780340 aatatgttaactttttaaaaaaacattttataatatccgtaatttaaaactgaaaa 17780285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 37551531 - 37551574
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttca 281  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  37551531 atcgtttatcatgttaatatgttaactttttataaaacatttca 37551574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 37654361 - 37654404
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttca 281  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  37654361 atcgtttatcatgttaatatgttaactttttataaaacatttca 37654404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 43535 - 43601
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaa-tttaaaaatgaaaa 307  Q
    ||||| |||||||||||||||||||| |||| | |||||||| | | ||||| ||||||||||||||    
T  43535 tttattatgttaatatgttaacttttcaaaaaatatttcatagtgttcgtaattttaaaaatgaaaa 43601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 4423347 - 4423404
Alignment:
Q  250 gttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||| |||| |||| | |||||||||| | |||||||||||||||||||    
T  4423347 gttaatatgctaaattttaaaaaaatatttcataatgttcgtaatttaaaaatgaaaa 4423404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 38510076 - 38509945
Alignment:
Q  187 aaaccacggaatatatagtatgtttttctaaaataaatcaagtgtgattaaa-----------tcgtttatcatgttaatatgttaactttttaaaagac 275  Q
    |||| ||||| ||||||  |||||||||||||||||||||||||||||| ||           ||||||||| |||||| ||||||| ||||||||||||    
T  38510076 aaactacggactatataacatgtttttctaaaataaatcaagtgtgattgaagtattatattatcgtttatcgtgttaagatgttaattttttaaaagac 38509977  T
Q  276 atttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| | |||||||||||||||||||||    
T  38509976 atttcatagtgtccgtaatttaaaaatgaaaa 38509945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 41498528 - 41498597
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||    
T  41498528 atcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaa 41498597  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 8529923 - 8529992
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| |||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||    
T  8529923 atcgtttaccatgttaatatgttaactttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaa 8529992  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 32951438 - 32951369
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||||||||||||||||| || |||||||||  | |||||||||||||||||||||    
T  32951438 atcgtttatcatgttaatatgttaactttttataaaacatttcattgtgtccgtaatttaaaaatgaaaa 32951369  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 40095053 - 40094984
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||||||| ||||||||||||| || |||||||||| | |||||||||||||||||||||    
T  40095053 atcgtttatcatgttaatttgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaa 40094984  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 43552109 - 43552046
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||||||||    
T  43552109 gtttatcatgttaatatgttaactttttaaaaaacatttcataa----cgtaatttaaaaatgaaaaa 43552046  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 50744401 - 50744332
Alignment:
Q  238 atcgtttatcatgttaatatgttaact-ttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    ||||||||||||||||||||||||||| ||| |||| |||||||||| | ||||||||||||||||||||    
T  50744401 atcgtttatcatgttaatatgttaactctttaaaaaaacatttcatagtgtccgtaatttaaaaatgaaa 50744332  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 36285694 - 36285628
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatga 304  Q
    ||||||||||||||||||||||||||||||||||| | |||| ||| | | ||||||||||||||||    
T  36285694 atcgtttatcatgttaatatgttaactttttaaaaaatattttatagtgttcgtaatttaaaaatga 36285628  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 45585805 - 45585739
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatga 304  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  45585805 atcgtttatcatgttaatatgttaacttttaaaaaaacattttatagtatctataatttaaaaatga 45585739  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 7444619 - 7444688
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| |||||||||||||||||||||||||  ||||| ||| | |||||||||| ||||||||||    
T  7444619 atcgtttattatgttaatatgttaactttttaaaaatcattttatagtgtccgtaattttaaaatgaaaa 7444688  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 30010456 - 30010525
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||| || | |||||||||| ||||||||||    
T  30010456 atcgtttataatgttaatatgttaactatttaaaaaacatttcgtagtgtccgtaatttcaaaatgaaaa 30010525  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 35349579 - 35349515
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||| || |||||||  | | |||||||||||||||||||||    
T  35349579 gtttatcatgttaatatgttaactttttataaaacatttc--agtgtccgtaatttaaaaatgaaaa 35349515  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 49946704 - 49946642
Alignment:
Q  242 tttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatga 304  Q
    |||||||||||||||||||||||||| |||| | |||| ||| | ||||||||||||||||||    
T  49946704 tttatcatgttaatatgttaacttttaaaaaaatattttatagtgtccgtaatttaaaaatga 49946642  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 20576251 - 20576185
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaa 306  Q
    |||||||||||||||||||| |||||| ||||||| |||||||  | | ||||||||||||||||||||    
T  20576251 atcgtttatcatgttaatatattaactctttaaaaaacatttc--agtgtccgtaatttaaaaatgaaa 20576185  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 10391998 - 10392066
Alignment:
Q  240 cgtttatcatgttaatatgttaacttttt-aaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||| |  |||||||||||| |||||    
T  10391998 cgtttatcatgttaatatgttaactttttaaaaaaacatttaataatgtttgtaatttaaaaacgaaaa 10392066  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 307
Target Start/End: Original strand, 12234077 - 12234203
Alignment:
Q  192 acggaatatatagtatgtttttctaaaataaatcaagtgtgattaa-----------atcgtttatcatgttaatatgttaactttttaaaagacatttc 280  Q
    ||||| ||||||  |||||||||||||||||||||||||||||| |           ||| | ||| ||||||||||| ||||||| ||||| |||||||    
T  12234077 acggactatataacatgtttttctaaaataaatcaagtgtgattgatgtataatatgatcatatattatgttaatatgctaactttataaaaaacatttc 12234176  T
Q  281 ataatatccgtaatttaaaaatgaaaa 307  Q
     || | |||||||||||||||||||||    
T  12234177 gtagtgtccgtaatttaaaaatgaaaa 12234203  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 28770852 - 28770915
Alignment:
Q  243 ttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaaa 308  Q
    |||||||||||||||||||| |||||| || |||||||||||| |  ||||||||||||| |||||    
T  28770852 ttatcatgttaatatgttaattttttataaaacatttcataatgt--gtaatttaaaaataaaaaa 28770915  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 51597795 - 51597861
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||| ||||||||||||||||||||||  ||||||||| | | | |||||||||| ||||||    
T  51597795 gtttatcatcttaatatgttaactttttaaaaaccatttcatagtgttcataatttaaaattgaaaa 51597861  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 26941006 - 26940977
Alignment:
Q  206 atgtttttctaaaataaatcaagtgtgatt 235  Q
    ||||||||||||||||||||||||||||||    
T  26941006 atgtttttctaaaataaatcaagtgtgatt 26940977  T

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Target: scaffold0026 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 1296 - 1365
Alignment:
Q  238 atcgtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||||||||  |||||||||||||||||||| |||||||||| | | | |||||||||||||||||    
T  1296 atcgtttatcatgacaatatgttaactttttaaaaaacatttcatagtgttcataatttaaaaatgaaaa 1365  T

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Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 16413 - 16347
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    ||||||||||||||||||||||| ||||| || |||||||||| | | | |||||||||||||||||    
T  16413 gtttatcatgttaatatgttaacgttttataaaacatttcatagtgttcataatttaaaaatgaaaa 16347  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 15390 - 15455
Alignment:
Q  241 gtttatcatgttaatatgttaactttttaaaagacatttcataatatccgtaatttaaaaatgaaaa 307  Q
    |||||||| ||||||||||| || |||||||| ||| |||||| | |||||||||||||||| ||||    
T  15390 gtttatcacgttaatatgttgaccttttaaaaaaca-ttcatagtgtccgtaatttaaaaataaaaa 15455  T

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